Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1793 ATGCCATTTCTCAGCTTACCAGGCTTCCTTCTTTTCTCCCTCGCCTTCTTCCACTTGTTTGTTCCTGCTCTCTTCTCAAACCTCGACTACGATATTCTCATTCGTGTCAAGAACTCCCATCTCGACGACCCCAATGGCGTTTTGGCAAACTGGGTTCCCAACCAACCCCAATCCCCATGTAATTGGACCGGCATCACCTGCGATTCCGCTAATTTCTCCGTTGTTTCCATCCACTTGAATGATTCCGGCGTCGCCGGCGGATTCCCCTTCGATTTCTGCCGGATTCCGACGCTCACGATCCTTTCCCTCGCCAACGCCTCCATCAATGGAACCTTACTCTCCCCTTCCTTCTCTCTTTGTTCTCGCCTCCAATTCCTCAATCTTTCCACTAACAATCTCGTCGGAAACCTGCCCGAGTTTTCCACTGCTTTTACCCACCTCCAAGTTCTCGACCTCTCCTCCAACAATTTCACCGGCGATATTCCTCGCAGTTTTGGCCTCTTGTCGGCCCTCACAGCTCTTCTTTTGTCCAACAATCTTCTCGACGGCCCGATCCCCTCTGTTCTGGGGAATCTCAGTGAGTTAACTGAATTGGCCATGGCTTATAATCCATATAAGCCGAGTCCGTTACCGCCGGAAATTGGAAACCTCACGAAGCTTGTTAATATGTTTTTACCCAAATCGCATCTCGTCGGACCCATTCCTGATTCCATCGGAAAACTGGCTCTGCTTACAAATCTCGATGTATCGGAAAATTCTATTTCGGGTCCGATCCCGGATTCGATCGGCGGACTTAGGAGCATCAAATTTATACAACTCTTTAACAACCGAATCTCCGGTGAGTTGCCGGAGAGCATCGGTGATTTGATTACTCTGTCAAAGTTAGATATCTCGCAGAATAATCTCACCGGGAAATTGCCGGCGAAAATTGGTGCGCTTCCTCTTGAACTTCTTCATCTCAATGACAATTTCCTTGAAGGGGAACTTCCGGTGAGTTTGGCTTTGAATCAGAATCTTTCAGAATTGAGACTCTTCAACAATACCTTTTCCGGTAAACTTCCGGCGGATTTGGGTCTGAATTCTTATTTGAAAGAATTTGATGTTTCTTCCAACAATTTCGAAGGTGAAATTCCGAAATTCCTCTGCCGTGGAAACAAACTTCAGAAACTTGTTTTATTCAGCAACGGTTTCTCTGGAAATTTCCCAGAATCGTACGGCGGTTGCGATTCTCTGAATTATGTCAGAATAGAGAATAATCAACTTTCCGGCGAGGTAGCGGACTCGTTCTGGAAACTCTCTCAGCTTAAACGAGTTCATCTTTCGGAAAATCAGTTTCAGGGATCTATTCCGCCGGCGATAGGCGGCGCTCGAGATCTCGAAGTTCTGTTGGTTGACGGTAACAACTTCTCCGATAAGTTGCCGGCGGAGATTTGCGAATTGAAAAGGGTTGTCCGGTTTGACGTCAGCAGGAACAAATTCTCCGGCGGAGTTCCTTCCTGTATAACAGAGTTAAAGAAACTTCAAAATCTCGACATGCAAGAAAACCAGTTCGCCGGAGAAATTCCCAAATTGGTTCAATCGTGGAAAGAACTAACGGAGTTAAATCTGTCCCATAATCAATTTTCAGGCGAGATTCCGCCGCTGCTTGGCGATTTACCGGTTCTAACGTACTTGGATCTCTCTTCAAATTTACTCTCCGGAAAAATCCCCGAGGAGTTGACGAAGTTGAAACCACAACTATTCAATTTATCCAACAACCAATTGACTGGAAAAGTCCCCTCCGGCTTCGACGACGAACGGTTGGTGGGCAGTTTAATGGGTAATCCGGGTCTCTGCAGCCCGGATTTGAAGCCGCTGAACCGGTGCCCGAAATCCAAACCTGCAATTTTCTATGTTGTCGTTATTCTCTCGGTTCTGGCTTTCGTTCTCATCGGGTCTCTCTTTTGGATTATCAAATTCAAGATGTATCTCTTCGGCAAACCGAAATCTCCATGGACTGTGACCAAGTTCCAGCGGGTCGGGTTCGATGAAGACGATGTAATTACTCATCTAACTAAAGCTAATGTAATCGGGTCGGGAGGTTCGGGTACGGTTTTCAAGGTGGATCTTAAAGCGGGTCAAACCGTTGCCGTCAAAAGTCTCTGGAGAGCCCACAACCAAGCGGAAACAGAATTGGATTTCCAATCAGAAGTTGAGACGTTGGGTCGGATCCGCCATGCAAATATAGTGAAGTTGTTGTTTAGCTGTAGTAATGGTGAAGGAAGTAGAATTCTTGTGTATGAGTACATGGAGAATGGGAGCTTGGGAGATGTTCTGCACGAGCACAAATCCGAAGCTTTGTCAGATTGGTCGAAAAGATTCGATATCGCTATAGGAGCGGCCCAAGGATTAGCTTATCTGCACCACGACTGTGTTCCTCCGATAATCCATCGTGATGTGAAGAGCAACAACATTCTCTTGGATGGCGAATTTTGTCCTCGAGTGGCTGACTTTGGGTTGGCAAAGACATTGCAGCATCAAGGGGAGGTTGACGATGGAAGTGTTATGTCTCGTATTGCTGGCTCCTACGGTTACATTGCCCCCGAGTATGGATATACTATGAAGGTAACAGAGAAGAGTGACGTGTATAGTTTTGGAGTGGTACTAATGGAGGTTGTCACAGGAAAGCGACCGAACGATCCATGCTTCGGAGAGAACAAAGATCTGGTTAAATGGGTTAGGGAGGCTGCTTTGTTGGAGGGAGAAGAGAAAGGGTTGAGTTTGGATGAGATTATTGATGAAAAGTTGGATCCAAGTACATGTGAAGTAGAAGAGATAGTGAAGATTTTGGATGTGGCAGTGCTTTGTACCTCAGCTTTGCCCATTGACAGACCTTCCATGAGAAGAGTAGTTGAGCTGATGAGGCACAAAAACCTGGCTCCTCTCAAGTCATGA 2934 46.46 MPFLSLPGFLLFSLAFFHLFVPALFSNLDYDILIRVKNSHLDDPNGVLANWVPNQPQSPCNWTGITCDSANFSVVSIHLNDSGVAGGFPFDFCRIPTLTILSLANASINGTLLSPSFSLCSRLQFLNLSTNNLVGNLPEFSTAFTHLQVLDLSSNNFTGDIPRSFGLLSALTALLLSNNLLDGPIPSVLGNLSELTELAMAYNPYKPSPLPPEIGNLTKLVNMFLPKSHLVGPIPDSIGKLALLTNLDVSENSISGPIPDSIGGLRSIKFIQLFNNRISGELPESIGDLITLSKLDISQNNLTGKLPAKIGALPLELLHLNDNFLEGELPVSLALNQNLSELRLFNNTFSGKLPADLGLNSYLKEFDVSSNNFEGEIPKFLCRGNKLQKLVLFSNGFSGNFPESYGGCDSLNYVRIENNQLSGEVADSFWKLSQLKRVHLSENQFQGSIPPAIGGARDLEVLLVDGNNFSDKLPAEICELKRVVRFDVSRNKFSGGVPSCITELKKLQNLDMQENQFAGEIPKLVQSWKELTELNLSHNQFSGEIPPLLGDLPVLTYLDLSSNLLSGKIPEELTKLKPQLFNLSNNQLTGKVPSGFDDERLVGSLMGNPGLCSPDLKPLNRCPKSKPAIFYVVVILSVLAFVLIGSLFWIIKFKMYLFGKPKSPWTVTKFQRVGFDEDDVITHLTKANVIGSGGSGTVFKVDLKAGQTVAVKSLWRAHNQAETELDFQSEVETLGRIRHANIVKLLFSCSNGEGSRILVYEYMENGSLGDVLHEHKSEALSDWSKRFDIAIGAAQGLAYLHHDCVPPIIHRDVKSNNILLDGEFCPRVADFGLAKTLQHQGEVDDGSVMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMEVVTGKRPNDPCFGENKDLVKWVREAALLEGEEKGLSLDEIIDEKLDPSTCEVEEIVKILDVAVLCTSALPIDRPSMRRVVELMRHKNLAPLKS 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19547336 19550841 - Sed0023136.1 Sed07g1793 720657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1793 977 ProSitePatterns Protein kinases ATP-binding region signature. 690 712 IPR017441 GO:0005524(InterPro)
Sed07g1793 977 ProSiteProfiles Protein kinase domain profile. 684 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1793 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1793 977 FunFam Receptor-like protein kinase HSL1 314 619 - -
Sed07g1793 977 Pfam Leucine rich repeat 146 203 IPR001611 GO:0005515(InterPro)
Sed07g1793 977 Gene3D Ribonuclease Inhibitor 209 312 IPR032675 -
Sed07g1793 977 Gene3D Phosphorylase Kinase; domain 1 660 762 - -
Sed07g1793 977 Gene3D Ribonuclease Inhibitor 27 208 IPR032675 -
Sed07g1793 977 Gene3D Ribonuclease Inhibitor 313 625 IPR032675 -
Sed07g1793 977 SUPERFAMILY L domain-like 375 618 - -
Sed07g1793 977 Gene3D Transferase(Phosphotransferase) domain 1 763 973 - -
Sed07g1793 977 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 67 309 - -
Sed07g1793 977 Pfam Protein tyrosine and serine/threonine kinase 686 912 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1793 977 Pfam Leucine rich repeat N-terminal domain 27 68 IPR013210 -
Sed07g1793 977 SUPERFAMILY L domain-like 58 374 - -
Sed07g1793 977 ProSiteProfiles Leucine-rich repeat profile. 146 168 IPR001611 GO:0005515(InterPro)
Sed07g1793 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 16 968 IPR050647 -
Sed07g1793 977 SMART serkin_6 684 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1793 977 SUPERFAMILY Protein kinase-like (PK-like) 680 969 IPR011009 -
Sed07g1793 977 Pfam Leucine Rich Repeat 363 382 IPR001611 GO:0005515(InterPro)
Sed07g1793 977 Pfam Leucine Rich Repeat 434 455 IPR001611 GO:0005515(InterPro)
Sed07g1793 977 Pfam Leucine Rich Repeat 292 312 IPR001611 GO:0005515(InterPro)
Sed07g1793 977 Pfam Leucine Rich Repeat 531 552 IPR001611 GO:0005515(InterPro)
Sed07g1793 977 Pfam Leucine Rich Repeat 244 265 IPR001611 GO:0005515(InterPro)
Sed07g1793 977 Pfam Leucine Rich Repeat 555 576 IPR001611 GO:0005515(InterPro)
Sed07g1793 977 ProSiteProfiles Leucine-rich repeat profile. 530 552 IPR001611 GO:0005515(InterPro)
Sed07g1793 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 763 976 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1793 Sed-Chr7:19547336 Sed14g1490 Sed-Chr14:23242860 2.30E-85 dispersed
Sed07g1793 Sed-Chr7:19547336 Sed07g1794 Sed-Chr7:19908111 5.10E-77 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79515 PF00069 Pkinase 1.40E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1793 - - - 0.0