Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1794 ATGCAGCTTCTTCTTCTTCTCCTCTTTCTCCACCTTACCCATTTCTCCGTTTCTTCTCACTTGCCGGAATACCGCGCTCTTTTATCTCTGAAGCGCTCTGTTTCCGATGGTTCCCAATCGGAGTTCTCCTCGTGGGACGCCGCCACTCCCCACTGCACCTGGGCCTCCGTCACCTGCGACTTCCGCCGCCACGTCGTCGCCCTCGACCTCTCCGGCATGAATCTCTCCGGTACCCTCTCTCCTGATCTGGGTAGTCTCCGATTTCTCCTTAATCTCTCCGTCGCCGCTTGCGGCATTTCCGGTCCCATTCCGCCGGAGATTTCTGCCATCTCTACGCTTAAGTTCCTTAACCTCTCTAACAATCTGATTAATGGCACATTTCCCTCCGAACTCTCCTCGCTTAAGAATCTCGAGGTTCTTGATTTGTATAACAACAATATGTCCGGGAACTTGCCCGTTGCGGTCGTCGACTTGCCGAATCTTCGCCATATGCATCTCGGTGGGAATTTCTTCTCCGGCGTGATTCCGCCCGAGTATGGACGGTGGCAGTTTATGGAGTATTTGGCGGTGTCGGGTAATGAGCTTCAAGGAAAGGTTCCGCCGGAGATTGGGAATCTGACGACGCTTCGTGAACTGTACATTGGGTACTACAATACCTACGAGGGTGGTTTGCCGCCGGCGATCGGGAACTTGTCGGAACTGGTTCGATTGGATGCTGCGAACTGTGGGTTAACGGGTGAGATTCCTCGCGAAGTTGGAAAGCTTCAGAAACTGGATACTCTGTTTCTTCAGGTAAATGGGTTTTCTGGGGCTTTGATTCCGGAGCTTGGGAGTTTGAAGGGATTGAAATCCATGGATTTGTCTAACAATGTTCTTGTTGGTGAGATTCCGGACTCGTTCTCTCAGCTGAAGAACATGACGCTTTTGCATCTTTTTAGGAATAAACTTCATGGAGCTATTCCGCAGTTCATTGGTGAGTTGCCGGAGCTGGAAGTGTTGCAGTTGTGGGAAAATAACTTCACTGGTTCGATTCCTTATAGTTTGGGGAAGAATGGCAAGCTTGTTGTTGTCGACATTTCGTCCAATAAATTGACTGGAACTTTACCTCCTGATATGTGCAATGGAAATCGACTTCAAACTCTGATTACTCTCAACAATTTCTTGTTCGGTCCAATCCCGGATTCTCTGGGACGATGCGAATCCTTGACTCGTATTCGAGTTGGGGAGAACTTTCTCAATGGTTCAATTCCTAAGGGTCTCTTCGGTTTGCCAAATCTATCACAGGTTGAGTTGCAGAACAATTTTCTCACTGGAGAATTTCCTGTCACTGATTCTGTCTCTGCAAATCTCGGCCAGATTAGTCTTTCCAACAATCGCCTCTCGGGGTCTTTACCGCCGATGATTGGGAATTTCTCCGGCGTCCAGAAGCTTCTTCTCGATGGAAACAAATTCTCCGGCCAAATCCCACCTGAAATCGGGCGTTTACAGCAGCTCTCTAAGATTGATTTCAGCCACAACAAATTCTCCGGCCCAATCGCGCCAGGATTCAGCCAATGTAAGCTCTTAACCTTCGTCGATCTCAGTTGCAACGAATTATCCGGTCAGATTCCAAATGAAATCACCAGAATGAGGATATTGAATTATCTGAATCTCTCAAGAAACCATTTAGTGGGAAGCGTTCCTGCTTCAATATCCTCAATGCAGAGCTTAACATCTGTTGATTTTTCATACAACAATCTCTCCGGTTTGGTTCCGGGCACCGGCCAGTTCAGCTACTTCAACTACACTTCATTTCTCGGCAATCCAGAGCTCTGCGGCCCTTACTTGGGACCTTGCAAAGATGGGGTTGGCAATGGCGCTCAACATCCCCATTTGAAAGGCTCCCTTTCTGCTTCTGTGAAGCTTCTGCTAGTCATCGTCTTGCTTGTATGCTCCATCGCATTTGCCATTGCCGCGATCATCAAAGCTCGGTCACTCAAACGAGCCAGCGACTCCCGAGCTTGGAAACTAACAGCATTTCAAAGACTAGATTTCACAGTAGATGACATTTTGGATTGCTTGAAAGAGGACAACATTATTGGAAAAGGAGGCGCTGGCATTGTTTACAAAGGATTTATGTCGAGTGGCGAACACGTCGCTGTGAAAAGGCTACCAACGATGGGGCGAGGGTCGTCTCACGACCATGGATTCAATGCGGAGATACAGACATTGGGGAGGATTAAACACCGTCACATTGTTAGACTGTTGGGATTCTGTTCTAACCATGAAACCAATCTTCTGGTTTATGAGTATATGCCCAATGGAAGTTTAGGGGAAGTTCTCCACGGGAAGAAAGGTGGGCATCTGCAATGGGACACAAGGTATAAGATCGCCATTGAAGCTGCTAAAGGTCTTTGCTATTTGCATCATGACTGTTCGCCATTGATTGTTCATCGAGATGTGAAATCAAACAATATTCTTTTGGATTCTGATTATGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCAGGCACATCAGAGTGTATGTCTGCCATTGCTGGATCTTACGGATACATAGCTCCAGAATATGCTTATACATTGAGAGTCGATGAGAAGAGTGATGTTTACAGCTTCGGAGTAGTACTGTTAGAGCTTGTAACCGGGCGAAAGCCTGTTGGAGAATTTGGCGACGGGGTTGACATAGTTCAATGGGTTAGAAAAATGACCGGCCCCAACAACGAAGGGGTAGTGAAAATCATTGATCCGCGGCTCTCCTCAGTACCACTCAAGGAAGTAACTCACGTGTTCTATGTAGCAATGCTATGCGTAGAAGACCAGGCAGTGGAGAGGCCGACAATGAGAGAAGTGGTTCAAATCCTCACAGAACTCCCAAAGCCACTAATTTCAAAACAAGTAGATTCGAAAGAAGCCGACCCAACACCCCCGGCACTACCGCCGTCATCCCCACCACCGCCACCGGGTACTGTGATATCCAATTCACCAAGCAGAACACACCCACCACCAGATCTTCTCAGCATTTGA 3036 47.69 MQLLLLLLFLHLTHFSVSSHLPEYRALLSLKRSVSDGSQSEFSSWDAATPHCTWASVTCDFRRHVVALDLSGMNLSGTLSPDLGSLRFLLNLSVAACGISGPIPPEISAISTLKFLNLSNNLINGTFPSELSSLKNLEVLDLYNNNMSGNLPVAVVDLPNLRHMHLGGNFFSGVIPPEYGRWQFMEYLAVSGNELQGKVPPEIGNLTTLRELYIGYYNTYEGGLPPAIGNLSELVRLDAANCGLTGEIPREVGKLQKLDTLFLQVNGFSGALIPELGSLKGLKSMDLSNNVLVGEIPDSFSQLKNMTLLHLFRNKLHGAIPQFIGELPELEVLQLWENNFTGSIPYSLGKNGKLVVVDISSNKLTGTLPPDMCNGNRLQTLITLNNFLFGPIPDSLGRCESLTRIRVGENFLNGSIPKGLFGLPNLSQVELQNNFLTGEFPVTDSVSANLGQISLSNNRLSGSLPPMIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNKFSGPIAPGFSQCKLLTFVDLSCNELSGQIPNEITRMRILNYLNLSRNHLVGSVPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPELCGPYLGPCKDGVGNGAQHPHLKGSLSASVKLLLVIVLLVCSIAFAIAAIIKARSLKRASDSRAWKLTAFQRLDFTVDDILDCLKEDNIIGKGGAGIVYKGFMSSGEHVAVKRLPTMGRGSSHDHGFNAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTGPNNEGVVKIIDPRLSSVPLKEVTHVFYVAMLCVEDQAVERPTMREVVQILTELPKPLISKQVDSKEADPTPPALPPSSPPPPPGTVISNSPSRTHPPPDLLSI 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19908111 19911986 - Sed0022082.1 Sed07g1794 720658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1794 1011 Pfam Protein kinase domain 689 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1794 1011 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Sed07g1794 1011 Gene3D Ribonuclease Inhibitor 372 613 IPR032675 -
Sed07g1794 1011 Gene3D Ribonuclease Inhibitor 20 212 IPR032675 -
Sed07g1794 1011 Gene3D Phosphorylase Kinase; domain 1 652 764 - -
Sed07g1794 1011 Gene3D Transferase(Phosphotransferase) domain 1 765 976 - -
Sed07g1794 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 616 - -
Sed07g1794 1011 Pfam Leucine Rich Repeat 282 303 IPR001611 GO:0005515(InterPro)
Sed07g1794 1011 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Sed07g1794 1011 Pfam Leucine Rich Repeat 475 495 IPR001611 GO:0005515(InterPro)
Sed07g1794 1011 Pfam Leucine Rich Repeat 546 567 IPR001611 GO:0005515(InterPro)
Sed07g1794 1011 Pfam Leucine Rich Repeat 353 374 IPR001611 GO:0005515(InterPro)
Sed07g1794 1011 Pfam Leucine Rich Repeat 330 350 IPR001611 GO:0005515(InterPro)
Sed07g1794 1011 Pfam Leucine Rich Repeat 522 542 IPR001611 GO:0005515(InterPro)
Sed07g1794 1011 Pfam Leucine Rich Repeat 498 519 IPR001611 GO:0005515(InterPro)
Sed07g1794 1011 SMART LRR_typ_2 134 158 IPR003591 -
Sed07g1794 1011 SMART LRR_typ_2 279 303 IPR003591 -
Sed07g1794 1011 SMART LRR_typ_2 567 590 IPR003591 -
Sed07g1794 1011 SMART LRR_typ_2 327 351 IPR003591 -
Sed07g1794 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1794 1011 SUPERFAMILY RNI-like 222 584 - -
Sed07g1794 1011 MobiDBLite consensus disorder prediction 966 1011 - -
Sed07g1794 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 656 764 - -
Sed07g1794 1011 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 961 IPR050647 -
Sed07g1794 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 68 323 - -
Sed07g1794 1011 Gene3D Ribonuclease Inhibitor 213 371 IPR032675 -
Sed07g1794 1011 SMART serkin_6 687 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1794 1011 SUPERFAMILY L domain-like 44 272 - -
Sed07g1794 1011 MobiDBLite consensus disorder prediction 977 995 - -
Sed07g1794 1011 Pfam Leucine rich repeat 112 169 IPR001611 GO:0005515(InterPro)
Sed07g1794 1011 ProSiteProfiles Protein kinase domain profile. 687 966 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1794 1011 SUPERFAMILY Protein kinase-like (PK-like) 680 958 IPR011009 -
Sed07g1794 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 765 975 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2484 Sed-Chr1:18576842 Sed07g1794 Sed-Chr7:19908111 5.20E-130 dispersed
Sed07g1794 Sed-Chr7:19908111 Sed14g0971 Sed-Chr14:18940819 2.20E-22 dispersed
Sed13g1910 Sed-Chr13:24071046 Sed07g1794 Sed-Chr7:19908111 1.60E-60 dispersed
Sed07g1793 Sed-Chr7:19547336 Sed07g1794 Sed-Chr7:19908111 5.10E-77 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79516 PF07714 PK_Tyr_Ser-Thr 3.40E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1794 - - - 0.0