Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1801 ATGAAGCCATGGGGTTTGGCCCTTTGGTTCACAGCCGTGGCTGGCGCTTTCTTCTTCCTGTCTCGTCTCGGCGGCAATGGCGATTGGATTTCGAGGAAGCCAGTAAGGAGACATCTAAGGAGTATGGACAGCACCAATTCTTCCAGGCTATTCAGCATCAAACTACAAAGAAAGGGTGGATACATTATAATGGACAATGGTATTGTGCAAGTTACACTTTCAACTCCTGATGGGGACGTGGTTGGATTGAGCTACAATGGAATTCATAACATTCTGGAAACCAAAAATGAAGAAGAAAACAGAGGATACTGGGATGCCGTATGGAACAACCCAAACAAACCCATTGGCACTGACAGATTAAAAGGAGGGAGGTTCAAAGTGATAAGATCGGACGAGGAGCAGCTGGAGATCTCGTTTCTCAAAACATGGAGCTCCGCAGTTGGGAAGGAAACGGCCCCTGTAAATGTGGACAAAAGGTACGTATTGCTGAGAGGAGGCTCCGGGTTCTACACCTACTCGATATTCGAGAGGCCGACCGGGTGGCCCGAGATAGAAATGGATCAAGTTAGGATTGTGTACAAGCTCCAAAGCAAAATGTTTGATTACATGGCAGTGTCGGATGATAGGCAGAGGGTGATGCCCACAATGGCCGACCGTGACAACGGTGAGCCATTGGCTTATCCCGAGGCTGTTCTTTTGACCAATCCTGCTAATCGACTACTCCGAGGAGAGGTGGATGACAAGTACCAGTACTCAACTGAGGACAAGGACAACCAGGTTCACGGCTGGATCGCCACCGATTCCGCCGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTTCGTGTCGCCGGTCCTGTCAAGCAGGATCTCACCTCCCATGCCGGCCCCATCACTCTCTCCATGTTTGTTAGCACACATTACGCCGGAAAGGACGTCGGCATGAGATTCGCAGCCGACGAGCCTTGGAAGAAGGTCTTTGGCCCTGTCTTTGTCTATCTCAACTCTGTCTACTCTGCTGGAGATTCGCTTTCTCTATGGCAAGATGCCAAGCAACAGTTGGCTATGGAAATTAGTAAGTGGCCCTATACTTTTCCTCAATCAGATGACTTCCCTTCTTCTGCTCAAAGAGGAAGTGTCTCCGGCCGGTTATTAGTCCGTGATGGGTATATCAGTAGCAGACTTATGCGTGCCAGTAATGCTTTCGTTGGATTGGCTTTGCCTGGTCCTGTCGGATCTTGGCAAACTGAAACTAAAGGTTATCAGTTCTGGACTCGAGCTGATAGTCACGGCAACTTCTTAATCAATAACATCCGAGCAGGGGTTTATAATCTCTATGCGTTTGTCCCTGGCTTTATTGGAGACTATAAATACGAAGAAAATATTACAATTGAGCCTGGGACTATAACCAGATTGAATGTGACGGTGTTTGATCCGCCAAGACAGGGCCCAACCATCTGGGAGATCGGCATTCCCGACCGCACTGCTGCTGAGTTTTATGTGCCCCAGCCTTATCCGACTCTTATGAATAAACTATACAATGACCAAGCTGACAACAGCTTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCCGATAATGATCTTTTGTTTACGGTTGATGTCGACAATTATACCCGGGACTGGTTCTACGCTCATGTAACCAGGGATGTGGGGAATCAAACATACGTACCAACCACATGGGAGATCAGATTTGTCTTGCAATCTGTGAACCAAACGGCAAATTATACCCTTCAAATGGCATTGGCATCTGCTGCTGAATGCGAATTGCAGGTTCGATTAAACGATCAAGCATCGGAGCAGGCTGCTTTCTCGACGGGGAAGATCGGAAGGGACAATGCGATTGCAAGGCATGGTATTCATGGACTTTACTGGTTATACTCTATATCTTTGGCTGGCGATCAATTTCTTGAGGGGAACAACTCCATCTTTCTCACTCAGACAAGAAGTGAAACTCCTTTCCAAGGTCTTATGTATGACTACATTCGACTAGAAGCTCCACCTCTAACATGA 2043 47.67 MKPWGLALWFTAVAGAFFFLSRLGGNGDWISRKPVRRHLRSMDSTNSSRLFSIKLQRKGGYIIMDNGIVQVTLSTPDGDVVGLSYNGIHNILETKNEEENRGYWDAVWNNPNKPIGTDRLKGGRFKVIRSDEEQLEISFLKTWSSAVGKETAPVNVDKRYVLLRGGSGFYTYSIFERPTGWPEIEMDQVRIVYKLQSKMFDYMAVSDDRQRVMPTMADRDNGEPLAYPEAVLLTNPANRLLRGEVDDKYQYSTEDKDNQVHGWIATDSAVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDVGMRFAADEPWKKVFGPVFVYLNSVYSAGDSLSLWQDAKQQLAMEISKWPYTFPQSDDFPSSAQRGSVSGRLLVRDGYISSRLMRASNAFVGLALPGPVGSWQTETKGYQFWTRADSHGNFLINNIRAGVYNLYAFVPGFIGDYKYEENITIEPGTITRLNVTVFDPPRQGPTIWEIGIPDRTAAEFYVPQPYPTLMNKLYNDQADNSFRQYGLWERYAAMYPDNDLLFTVDVDNYTRDWFYAHVTRDVGNQTYVPTTWEIRFVLQSVNQTANYTLQMALASAAECELQVRLNDQASEQAAFSTGKIGRDNAIARHGIHGLYWLYSISLAGDQFLEGNNSIFLTQTRSETPFQGLMYDYIRLEAPPLT 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20184725 20194175 + Sed0024538.1 Sed07g1801 720665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1801 680 CDD RGL4_M 376 473 IPR029413 -
Sed07g1801 680 FunFam Rhamnogalacturonate lyase B 373 471 - -
Sed07g1801 680 Gene3D - 483 675 - -
Sed07g1801 680 Pfam Rhamnogalacturonate lyase family 50 245 IPR010325 -
Sed07g1801 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 678 IPR051850 -
Sed07g1801 680 CDD RGL4_N 53 343 - -
Sed07g1801 680 CDD RGL4_C 487 675 - -
Sed07g1801 680 Pfam Polysaccharide lyase family 4, domain III 485 674 IPR029411 -
Sed07g1801 680 Gene3D - 52 327 IPR014718 GO:0030246(InterPro)
Sed07g1801 680 SUPERFAMILY Galactose-binding domain-like 483 675 IPR008979 -
Sed07g1801 680 SUPERFAMILY Galactose mutarotase-like 63 336 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Sed07g1801 680 Gene3D - 373 476 - -
Sed07g1801 680 SUPERFAMILY Starch-binding domain-like 374 476 IPR013784 GO:0030246(InterPro)
Sed07g1801 680 Pfam Polysaccharide lyase family 4, domain II 399 470 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1801 Sed-Chr7:20184725 Sed10g0804 Sed-Chr10:5819657 4.30E-224 dispersed
Sed07g1800 Sed-Chr7:20184465 Sed07g1801 Sed-Chr7:20184725 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1801 K18195 - csv:101215252 1126.69