Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1816 ATGGCTCCCGCGACCAACTGGCTGTCCTTTTCCCTCTCTCCCTTGGAAATGCTTCGCTCCCCCGACCCTCCCTTTGAACCTTCCTCCACCGCCTCTCCTCACTACCTCCTCGACAATTTCTACTCCAACCATGGATGGAGTCATGGAACTAATTCCCATCACAAATCATCGCAACTGTTCTTCATGGAGGGAGATGAGAATCATGACGACGAACCAACGCCGCCCATCCTGAGTAGCTACGTTCATCCTCAAACCCAGCACCAACCAAAGCTCGAAGATTTCTTCGGCGATTCGTCCGCGGCGATGGTGCGGTACTCGGACTCCCAAACGGAGACCCAAGATTCGTCTTTGACTCATATGTACGACCATGCCTATTTCGGGGACCCACAGGATCTCAAAACCATCGCCGCCTTTCACTCGGCCTCTGAGCTTGACGATTCCGCTTCCGTTCCCAGAGCCCACATCCCCCCCGCCACCGGTGGTGCTCTCTCCCTCGCCGTCACGGCGCCGCCGCCCCCTGCTCTCCCCTCTGACTCCGATTCCTCCAAGAAAATTGCTGATACCTTCGGCCAGCGAACTTCCATTTACAGAGGTGTCACCAGGCACAGGTGGACGGGCAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTGGCAGCTCTGAAGTACTGGGGTTCTACTGCAACCACCAATTTTCCTGTTTCGAATTACACCAAAGAACTGGAAGAGATGAAACTTGTCACCAAGCAAGAGTTTATCGCATCTCTGCGGAGAAAAAGCAGCGGTTTCTCGAGGGGTGCATCGATATACAGAGGTGTGACAAGGCATCATCAGCAGGGTCGATGGCAGGCGAGGATTGGCCGTGTTGCAGGGAATAAGGACCTATATCTTGGGACCTTTGCTACGGAAGAGGAAGCAGCAGAGGCATATGATATAGCAGCGATCAAGTTCAGGGGTTTGAACGCTGTGACCAACTTCGAGATGAATCGATATGATGTGGAAGCTATTGCAAATAGTTCACTGCCAATTGGGGGAGCAGCAAAGAGGCTGAAGCTTTGCCTCGAATCGGAGCAGAAGCCACTCACAAATCATGACCAAGCAGTCCAGTACGGTGGAGGAAGCAGCATCAACTTCGGCGCTGCAATGCAGCCTGGGCCACCCATTCCCAGTGGGATTCCATACGATACTGCAGCCATGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAATGGCATCGGCTCTTCGGAGTCGACCAGCCAGCCCATTTCAGCATCGACTGCAGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCATATTAG 1410 52.62 MAPATNWLSFSLSPLEMLRSPDPPFEPSSTASPHYLLDNFYSNHGWSHGTNSHHKSSQLFFMEGDENHDDEPTPPILSSYVHPQTQHQPKLEDFFGDSSAAMVRYSDSQTETQDSSLTHMYDHAYFGDPQDLKTIAAFHSASELDDSASVPRAHIPPATGGALSLAVTAPPPPALPSDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGSTATTNFPVSNYTKELEEMKLVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAIANSSLPIGGAAKRLKLCLESEQKPLTNHDQAVQYGGGSSINFGAAMQPGPPIPSGIPYDTAAMLYHHNYFHHLQPNGIGSSESTSQPISASTAAPQAAEFFVWPHQSY 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20566170 20570087 - Sed0012684.1 Sed07g1816 720680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1816 469 ProSiteProfiles AP2/ERF domain profile. 195 258 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1816 469 FunFam AP2-like ethylene-responsive transcription factor ANT 194 260 - -
Sed07g1816 469 SUPERFAMILY DNA-binding domain 194 260 IPR016177 GO:0003677(InterPro)
Sed07g1816 469 FunFam AP2-like ethylene-responsive transcription factor 293 354 - -
Sed07g1816 469 CDD AP2 194 260 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1816 469 ProSiteProfiles AP2/ERF domain profile. 294 352 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1816 469 PRINTS Ethylene responsive element binding protein signature 334 354 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1816 469 PRINTS Ethylene responsive element binding protein signature 196 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1816 469 SMART rav1_2 195 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1816 469 SMART rav1_2 294 358 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1816 469 MobiDBLite consensus disorder prediction 161 184 - -
Sed07g1816 469 SUPERFAMILY DNA-binding domain 293 353 IPR016177 GO:0003677(InterPro)
Sed07g1816 469 Pfam AP2 domain 295 344 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1816 469 Gene3D AP2/ERF domain 294 354 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1816 469 Gene3D AP2/ERF domain 195 260 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1816 469 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 116 387 - -
Sed07g1816 469 CDD AP2 293 352 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1816 Sed-Chr7:20566170 Sed13g1074 Sed-Chr13:9313707 2.30E-192 dispersed
Sed05g1127 Sed-Chr5:11131304 Sed07g1816 Sed-Chr7:20566170 3.60E-94 transposed
Sed11g0715 Sed-Chr11:10510413 Sed07g1816 Sed-Chr7:20566170 4.80E-100 transposed
Sed13g1073 Sed-Chr13:9313707 Sed07g1816 Sed-Chr7:20566170 1.00E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39131 PF00847 AP2 3.10E-09 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1816 K09285 - csv:101217714 699.508