Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1832 ATGTCTCTGGTCTTGCATTCTCCCAAGACTAACAAAAATATTTACAAAGCTCTTATAGCTGCTGAATACAATGGTGTCAAGGTTGACATCGCCTCAGATTTTACCATGGGCGTATCCAATAAGTCCCCTGAGTTTCTCAAAATGAATCCTATTGGGAAGATTCCTGTGCTGGAAACACCTGAGGGCAGTATCTTTGAGAGCAACGCTATAGCTCGCTATGTTGCTCGCTTGACGGACAATGGTTTGTTTGGCTCTTCTTCAATTGAATATGGGCATGTTGAACAATGGATTGATTTTTCCACATTGGAATGTGATGCTCATATTTTAACTATAGTGAGGCCTAGATTTGGATATGCTGTTTACAACGCTGCTTTAGAAGAAGCTGCAAATGCTGCGCTTAAAAGAGCTTTGGCTGCTTTGAACTCTTACCTTGCTTCAAACACATACCTTGTTGGACATTCTGTGACATTGGCTGATATCATTTTGACGTGCAATCTATATTGGGGATTCTCTGCTGTGTTGCCTAAAAGCTTTACTTCTGAGTTCCCTCACGTGGAGAGGTACTTCTGGACACTGGTTAATCAACCAAATTTCAGAAAGATAATTGGTGAGGTGAAGCAAACAGAAAGTGTTCCACCAGTTAGAACACCCGAAGAGGTAGCAGCTGCTGCCAAAGAAAAGTCTGTGCCCAAGAAAGATGAGAAGCCCAAAGCAGCAGCTCCTGCTGAGGAAGAGGATGCACCGAAGCCCAAGGCCAAAAATCCTCTTGACCTGCTTCCTCCCAGTAAGATGATTTTGGATGAGTGGAAACGTCTCTACTCGAACACAAAAACTAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCTGTAGGGTTCTCCCTTTGGTTCTGTGATTACAAGTACAATGACGAGAACACAGTTTCCTTTGTGACTCTGAACAAAGTTGGTGGATTTCTCCAGAGAATGGATCTTGCTCGCAAGTATGCATTTGGAAAGATGCTCGTGATCGGATCAGAGGCGCCCTTCAAAGTGAAGGGGCTATGGCTTTTCCGTGGACAAGAAATTCCAAAATTTGTGATGGATGAGTGTTACGACATGGAGCTGTACGAGTGGAAGAAGGTCGATATCTTGGATGAAGCCCAGAAAGAGAGAGTGAACCAAATGATTGAAGACCAGGAACCATTTGAGGGAGAAGCTCTTTTGGATGCCAAATGCTTCAAGTAA 1239 43.66 MSLVLHSPKTNKNIYKALIAAEYNGVKVDIASDFTMGVSNKSPEFLKMNPIGKIPVLETPEGSIFESNAIARYVARLTDNGLFGSSSIEYGHVEQWIDFSTLECDAHILTIVRPRFGYAVYNAALEEAANAALKRALAALNSYLASNTYLVGHSVTLADIILTCNLYWGFSAVLPKSFTSEFPHVERYFWTLVNQPNFRKIIGEVKQTESVPPVRTPEEVAAAAKEKSVPKKDEKPKAAAPAEEEDAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPVGFSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPKFVMDECYDMELYEWKKVDILDEAQKERVNQMIEDQEPFEGEALLDAKCFK 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22273039 22284838 - Sed0028056.3 Sed07g1832 720696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1832 412 Pfam Glutathione S-transferase, C-terminal domain 102 196 IPR004046 -
Sed07g1832 412 SUPERFAMILY Thioredoxin-like 2 80 IPR036249 -
Sed07g1832 412 FunFam Elongation factor 1B gamma 1 74 - -
Sed07g1832 412 CDD GST_N_EF1Bgamma 3 77 - -
Sed07g1832 412 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 252 412 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed07g1832 412 Gene3D Glutaredoxin 1 74 - -
Sed07g1832 412 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 252 412 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed07g1832 412 SUPERFAMILY GST C-terminal domain-like 73 213 IPR036282 -
Sed07g1832 412 FunFam Elongation factor 1 gamma 79 215 - -
Sed07g1832 412 FunFam Elongation factor 1-gamma 1 252 412 - -
Sed07g1832 412 Pfam Elongation factor 1 gamma, conserved domain 251 359 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed07g1832 412 SMART EF1G_2 251 359 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed07g1832 412 SFLD Glutathione Transferase (cytosolic) 4 189 IPR040079 -
Sed07g1832 412 MobiDBLite consensus disorder prediction 220 252 - -
Sed07g1832 412 Gene3D - 79 212 - -
Sed07g1832 412 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
Sed07g1832 412 Pfam Glutathione S-transferase, N-terminal domain 12 76 IPR004045 -
Sed07g1832 412 SFLD Main (cytGST) 4 189 - -
Sed07g1832 412 SUPERFAMILY eEF1-gamma domain 253 412 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed07g1832 412 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Sed07g1832 412 MobiDBLite consensus disorder prediction 213 255 - -
Sed07g1832 412 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 412 IPR044628 GO:0004364(InterPro)
Sed07g1832 412 CDD GST_C_EF1Bgamma_like 89 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1832 Sed-Chr7:22273039 Sed07g1834 Sed-Chr7:22281748 9.90E-232 dispersed
Sed07g1832 Sed-Chr7:22273039 Sed07g1833 Sed-Chr7:22281748 9.90E-232 tandem
Sed13g1117 Sed-Chr13:10216242 Sed07g1832 Sed-Chr7:22273039 4.80E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1832 K03233 - csv:101215571 664.84