Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g1838 | ATGGAGGAGAGTTGCGAGAACGGCCGTGAAATCGATGGCCCTGAGAGGGTGGTGGACTCGCCATTGTCAGCGGATCGAGATTCTGTATCCATGATGCTTGAGGAGCCTCTGTTGCGAAACAGTGCTGCCAGGATCAGCACCACCTCTCAGCTTGCCATTGTTGGCTCTAATATCTGTCCAATTGAGAGTCTCGACTATGAGATTATTGAGAATGAGCTTTTCAAGCAAGACTGGAGGTCCAAAACAAAAATCGAGATATGTCAGTATCTTATCCTCAAATGGGCACTGTGCCTTCTCATTGGTTTGGTTACCGGGCTTGTTGGCTTCTTCAATAATATAGCTATTTTTGGTTCTATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGTGCGTGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATACGGCTTGACCTGGAAATGGCTGAGATACTTCAAAAATGACAGGGACAGGCGGGATTTGATCACTTGTGGTGCAGGAGCTGGTGTCGCGGCTGCCTTTCGGGCTCCAGTTGGTGGGGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTGTGGAGGGCCTTTTTCACTACTGCTGTAGTAGCCGTTGTGTTAAGGAGTTTCATGGAGTTTTGTCGAGGGGGACGATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTTAAAATCCATACAGAAGACACAACTTATAGCACTCCAGAACTTATAGCTATTGTTTTACTTGGAGTTATTGGTGGTGTGTTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTCCTCCGAACCTATAACGTCATAAATGAAAGAGGTCCTGGATCGAAAGTCCTCCTTGTTGTTAGCATTTCCCTATTGACATCCTGTGTTTCAATTGGTCTTCCTTGGCTCTCGCAATGTATACCTTGCCCACCTAACTTGGAAGACCAATGCCCAACCGTTGGTCGCTCAGGAAACTACAAGAATTTCCAATGCCCACCTGGCCATTACAATGATCTTGCTTCTTTATTTTTCAATACCAATGATGATGCCATCCGGAATCTGTTCTCATCTGCTACTGACAAGCAATTTCAGCTCTCCTCACTTTTTATCTTCTTTATTGCTATCTATTGTCTCGGCATTATTACTTATGGCATTGCCGTGCCTTCGGGGCTCTTCATTCCCGTAATCCTGGCAGGGGCCTCTTATGGTCGCATCGTAGGGAGGTTGTTTGGTTCAGTTGCCACTCTTGATGTCAGTCTCTATGCCCTTCTTGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTGTGTGTCATACTCCTTGAACTTACTAATAACCTTTTGATGCTCCCATTATTAATGCTGGTTCTTCTAATTTCAAAGTCAGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAAGGACTACCTTTTATGGAAGCCCATGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTGATTACATTCTTTGGGATCGAAAAGGTCAATAACATTATCCATGCTTTGAGCATGACGAACCACAATGGGTTTCCTGTCATTGATGAACCGCCTTTCTCAGATAACTCAGAGCTTTGTGGGCTTGTTCTGAGATCTCATCTGCTTGTTTTGCTTAAAGAGAAAAAATTTACAAAGAAAAAGGCATCAATTAGATCAGACATTTTGAGGAGCTTCAAAGCACATGATTTTGCAAAACCTGGTTATGGCAAAGGGTTGAAACTAGAAGATTTGGACATCAAAGAGGAGGAGTTGGAAATGTTTGTCGATCTTCATCCCATTACAAATACGTCGCCCTACACGGTGGTAGAAACAATGTCACTAGCTAAAGCGGCGATTCTCTTTCACGCGCTCGGCTTGAGGCACTTATTGGTGGTTCCAAAGACACCTGGGAGGCCTCCCATTGCTGGAATTCTTACAAGGCATGACTTCATGCCGGAACATATTCTGGGCCTTTACCCGCATCTCAACCGCCATTAA | 2091 | 45.05 | MEESCENGREIDGPERVVDSPLSADRDSVSMMLEEPLLRNSAARISTTSQLAIVGSNICPIESLDYEIIENELFKQDWRSKTKIEICQYLILKWALCLLIGLVTGLVGFFNNIAIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYGLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRAFFTTAVVAVVLRSFMEFCRGGRCGLFGEGGLIMFKIHTEDTTYSTPELIAIVLLGVIGGVFGSLYNYLVDKVLRTYNVINERGPGSKVLLVVSISLLTSCVSIGLPWLSQCIPCPPNLEDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFSSATDKQFQLSSLFIFFIAIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFFGIEKVNNIIHALSMTNHNGFPVIDEPPFSDNSELCGLVLRSHLLVLLKEKKFTKKKASIRSDILRSFKAHDFAKPGYGKGLKLEDLDIKEEELEMFVDLHPITNTSPYTVVETMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHILGLYPHLNRH | 696 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 22509888 | 22541265 | + | Sed0008365.1 | Sed07g1838 | 720702 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g1838 | 696 | Pfam | Voltage gated chloride channel | 114 | 484 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed07g1838 | 696 | ProSiteProfiles | CBS domain profile. | 631 | 695 | IPR000644 | - | |
| Sed07g1838 | 696 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 115 | 685 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Sed07g1838 | 696 | PRINTS | Chloride channel signature | 453 | 472 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed07g1838 | 696 | PRINTS | Chloride channel signature | 435 | 451 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed07g1838 | 696 | PRINTS | Chloride channel signature | 114 | 133 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed07g1838 | 696 | PRINTS | Chloride channel signature | 491 | 505 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed07g1838 | 696 | PRINTS | Chloride channel signature | 403 | 423 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed07g1838 | 696 | PRINTS | Chloride channel signature | 178 | 197 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed07g1838 | 696 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Sed07g1838 | 696 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 507 | 684 | - | - | |
| Sed07g1838 | 696 | Gene3D | - | 532 | 668 | IPR046342 | - | |
| Sed07g1838 | 696 | Gene3D | Clc chloride channel | 111 | 505 | - | - | |
| Sed07g1838 | 696 | SUPERFAMILY | CBS-domain pair | 508 | 682 | IPR046342 | - | |
| Sed07g1838 | 696 | Pfam | CBS domain | 632 | 682 | IPR000644 | - | |
| Sed07g1838 | 696 | SUPERFAMILY | Clc chloride channel | 71 | 506 | IPR014743 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g1838 | Sed-Chr7:22509888 | Sed13g1107 | Sed-Chr13:10076534 | 6.8e-313 | dispersed | |
| Sed13g1106 | Sed-Chr13:10076534 | Sed07g1838 | Sed-Chr7:22509888 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g1838 | K05016 | - | csv:101209987 | 978.778 |