Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1852 ATGCTGTTTTTCCTTGTTTTTACATTCTTCTCTCTTCTAGGCTCCTCTTCTTCTCACAGTCTAGTCAGTGACTTTCATGTTTTGCTTGCACTCAAACAAGAGTTTAAATTCTCTCACACCAATGCACTGAGCACTTGGACTGCCTCAAACTTCAGCTCTGTTTGTTCGTGGGACAGGATTAAGTGCTCAGATAAACGAGTTGTGTCGGTTGACTTGACAGATTTGAACCTTGGTGGCTCTGTTTCACCGTTGATTTCTAGGCTTGATCAAATTTCTGAGTTATCTGTGGCAGGAAATTACTTCTCTGGTGCCATTGAAGTAGTGAATTTGAGTTACCTTCGATTTCTTAACATCTCAAACAACCAGTTTATTGGGACTTTGAACTGGAACTTTTCAAATTTGCCAAACTTGGAAGTGTTTGATGCTTATAATAACAGCTACAGTGCTCTGCTCCCCACTGAGATTTTGAACTTACGAAACCTCAAATACTTGGACCTTGGAGGCAATTTTTTCCATGGAAATATCCCTGAAAGCTATGGCAGTTTTGAAGAGTTGCAATATCTTTCTCTTGCCGGAAATGATTTGGTAGGGAAAATCCCAGGTGAGTTGGGAAATCTTACAAATTTGAGAGAAATTTACTTGGGTCATTACAATGTTTTCGAAGGTGGGATTCCATCCGAGCTCGGGAAGTTGGACAATTTGGTTATTATGGAGATTACAGACTGCGGTTTAGATGGTCAAATTCCTCATGAACTGGGGAATTTGAAGGCCTTGAATACTCTATATCTGCATACGAATCTACTCTCAGGTTCAGTCCCGAAGCAGTTAGGCAATTTAACGAACTTGGTCTTTCTTGATCTCTCCAACAATGCACTCACAGGAGAAATCCCATCTGAGTTTGTTGATCTCAAACAACTCAAGCTTTTCAACCTCTTCATGAACAAACTGCATGGATCTATTCCAAACTACGTAGTAGATTTTCTGAACTTGGAGAGCTTGGCGCTGTGGATGAACAACTTCACTGGCACAATCCCAAAGAATCTCGGCCAAAATGGGAGGCTTCAGCTCCTCGATCTGTCAACGAACAAGCTCACAGGTACGATCCCTCAGGATTTGTGTTCATCAAACCGGCTGAAAATACTGATTTTGATGAACAACTTCCTGTTTGGGCCAATCCCTGAGAGCTTGGGGACATGTGAAAGTCTTACAAAAGTGAGGTTAGGGCAGAACTATCTGAATGGAAGCATTCCCAATGGCTTTATTTACTTGCCTCAGCTAAATCTAGCAGAGTTTCAGAACAACTACCTTTCAGGTACACTTTCAGAGAATTGGGAGAGTTCATCAAAACCTATCAAATTAGGTCAACTTAATCTCTCTAATAATCTTCTATCTGGAACTTTACCATTTTCACTTTCTAATTTCTCTTCTCTACAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGTACCATCCCTCCATCCATTGGAGAACTTAGTGAACTACTAAAGCTCGATCTCAGCAGAAACTCACTTTCAAGTCAAATTCCACCTGAAATTGGGAATTGCATCCATCTCACTTACCTTGATTTGAGCAAGAACAACCTCTCTGGCCCAATTCCACCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCGAGAAATCACCTAAACCAATCGCTACCGAGATCAATAGAGGCCATGAAGAGCCTTACAATAGCCGATTTCTCCTTCAACGATTTCTCTGGAAAGCTACCGGAATCAGGACAACTTGCCTTCTTCAATGCTTCCTCCTTTGCAGGAAATCCTCAACTCTGCGGCTCTCTGCTCAACAACCCCTGCAACTTGGCAACAACAACAGCAGAATTAGGAAAAAATCCGGCCTATTTCAAGCTAATCTTCGCCCTCGGCCTACTGATTTTGTTTCTAGTGTTCGTCATAGCCGCAGTAGTAAAGGTAAAATCATTCAAAAGAAACGCCCTAAGTTCTTGGAAAATGACCTCATTCCAAAACCTGGATTTCACTGTCTACGACGTCCTGGAGTGCGTCAAAGACGGCAACGTGATCGGACGAGGCGGCGCCGGCATAGTCTACCACGGAAAAATGCCGAACGGAGTCGAAATCGCTGTGAAGAAACTCCTAGGGTTTGGTCCTAACAGTCACGATCACGGATTCCGAGCGGAGATCCAAACCCTAGGCAACATTCGACACCGAAACATTGTCAGATTACTAGCATTCTGCTCCAATAAAGACACAAATCTGCTCGTATACGAATACATGAGGAACGGAAGCTTAGGCGAAGCACTCCACGGCAAAAAAGCGCCGTTCCTTGGATGGAATTTGAGGTACAAAATCGCCATTGAAGCCGCCAAAGGTCTCTGCTACCTCCACCACGATTGCTCTCCACTAATCGTCCACCGAGACGTGAAATCGAACAACATTCTCTTGAATTCCAACTTCGAAGCTCATGTTGCCGATTTCGGACTCGCCAAGTTCATCTTCGACGGCGGCGCGTCGGAATGTATGTCGGTCGTCGCCGGATCTTATGGCTACATCGCTCCCGAATATGCATACACATTGAGAGTCGATGAAAAAAGTGACGTTTATAGTTTTGGAATTGTACTATTAGAGCTTTTAACAGGGCGTCGTCCAGTAGGAGATTTTGGAGATGGAATAGTTGACATAACACAATGGTGCAAAAGAATTTTAACAAATGGTGAGAACAAAAACGATATTATTTACATAGTTGACAAAAGGATCGGAATGGTATCCAAAGAGGAAGCAAAGCATTTGTTCTTTATAGCAATGTTGTGTGTGCAAGAAAACAGCTTAGAGAGACCAGCAATGAGAGAAGTGGTTCAAATGTTAGTTGAAGTTCCTCATGAGCCTCCAAATTGTTACCAATCTTCCTCTACTTCTTCTCCTTGTCAAATTTGA 2943 42.68 MLFFLVFTFFSLLGSSSSHSLVSDFHVLLALKQEFKFSHTNALSTWTASNFSSVCSWDRIKCSDKRVVSVDLTDLNLGGSVSPLISRLDQISELSVAGNYFSGAIEVVNLSYLRFLNISNNQFIGTLNWNFSNLPNLEVFDAYNNSYSALLPTEILNLRNLKYLDLGGNFFHGNIPESYGSFEELQYLSLAGNDLVGKIPGELGNLTNLREIYLGHYNVFEGGIPSELGKLDNLVIMEITDCGLDGQIPHELGNLKALNTLYLHTNLLSGSVPKQLGNLTNLVFLDLSNNALTGEIPSEFVDLKQLKLFNLFMNKLHGSIPNYVVDFLNLESLALWMNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPQDLCSSNRLKILILMNNFLFGPIPESLGTCESLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQNNYLSGTLSENWESSSKPIKLGQLNLSNNLLSGTLPFSLSNFSSLQILLLNGNQFSGTIPPSIGELSELLKLDLSRNSLSSQIPPEIGNCIHLTYLDLSKNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPRSIEAMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNLATTTAELGKNPAYFKLIFALGLLILFLVFVIAAVVKVKSFKRNALSSWKMTSFQNLDFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKDTNLLVYEYMRNGSLGEALHGKKAPFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFIFDGGASECMSVVAGSYGYIAPEYAYTLRVDEKSDVYSFGIVLLELLTGRRPVGDFGDGIVDITQWCKRILTNGENKNDIIYIVDKRIGMVSKEEAKHLFFIAMLCVQENSLERPAMREVVQMLVEVPHEPPNCYQSSSTSSPCQI 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25118503 25126434 - Sed0003095.1 Sed07g1852 720716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1852 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 131 218 - -
Sed07g1852 980 Pfam Protein kinase domain 687 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1852 980 PRINTS Leucine-rich repeat signature 498 511 - -
Sed07g1852 980 PRINTS Leucine-rich repeat signature 354 367 - -
Sed07g1852 980 Gene3D Ribonuclease Inhibitor 218 324 IPR032675 -
Sed07g1852 980 SUPERFAMILY Protein kinase-like (PK-like) 673 959 IPR011009 -
Sed07g1852 980 Gene3D Phosphorylase Kinase; domain 1 650 761 - -
Sed07g1852 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1852 980 Gene3D Transferase(Phosphotransferase) domain 1 762 973 - -
Sed07g1852 980 Gene3D Ribonuclease Inhibitor 325 619 IPR032675 -
Sed07g1852 980 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 961 IPR050647 -
Sed07g1852 980 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Sed07g1852 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 219 324 - -
Sed07g1852 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 761 - -
Sed07g1852 980 SMART LRR_typ_2 327 351 IPR003591 -
Sed07g1852 980 SMART LRR_typ_2 255 278 IPR003591 -
Sed07g1852 980 SMART LRR_typ_2 279 303 IPR003591 -
Sed07g1852 980 SMART LRR_typ_2 498 522 IPR003591 -
Sed07g1852 980 SMART LRR_typ_2 352 375 IPR003591 -
Sed07g1852 980 SUPERFAMILY L domain-like 352 609 - -
Sed07g1852 980 SUPERFAMILY RNI-like 69 389 - -
Sed07g1852 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 762 975 - -
Sed07g1852 980 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 620 - -
Sed07g1852 980 Pfam Leucine Rich Repeat 113 134 IPR001611 GO:0005515(InterPro)
Sed07g1852 980 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Sed07g1852 980 Pfam Leucine Rich Repeat 160 181 IPR001611 GO:0005515(InterPro)
Sed07g1852 980 Pfam Leucine Rich Repeat 281 302 IPR001611 GO:0005515(InterPro)
Sed07g1852 980 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
Sed07g1852 980 Pfam Leucine Rich Repeat 453 474 IPR001611 GO:0005515(InterPro)
Sed07g1852 980 Pfam Leucine Rich Repeat 353 374 IPR001611 GO:0005515(InterPro)
Sed07g1852 980 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Sed07g1852 980 Pfam Leucine Rich Repeat 476 498 IPR001611 GO:0005515(InterPro)
Sed07g1852 980 SMART serkin_6 685 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1852 980 ProSiteProfiles Protein kinase domain profile. 685 966 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1852 980 Gene3D Ribonuclease Inhibitor 21 217 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1852 Sed-Chr7:25118503 Sed07g1854 Sed-Chr7:25118503 3.60E-288 dispersed
Sed07g1852 Sed-Chr7:25118503 Sed07g1853 Sed-Chr7:25118503 1.30E-285 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79526 PF00069 Pkinase 1.20E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1852 - - - 0.0