Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g1854 | ATGCTGTTTTTCCTTGTTTTTACATTCTTCTCTCTTCTAGGCTCCTCTTCTTCTCACAGTCTAGTCAGTGACTTTCATGTTTTGCTTGCACTCAAACAAGAGTTTAAATTCTCTCACACCAATGCACTGAGCACTTGGACTGCCTCAAACTTCAGCTCTGTTTGTTCGTGGGACAGGATTAAGTGCTCAGATAAACGAGTTGTGTCGGTTGACTTGACAGATTTGAACCTTGGTGGCTCTGTTTCACCGTTGATTTCTAGGCTTGATCAAATTTCTGAGTTATCTGTGGCAGGAAATTACTTCTCTGGTGCCATTGAAGTAGTGAATTTGAGTTACCTTCGATTTCTTAACATCTCAAACAACCAGTTTATTGGGACTTTGAACTGGAACTTTTCAAATTTGCCAAACTTGGAAGTGTTTGATGCTTATAATAACAGCTACAGTGCTCTGCTCCCCACTGAGATTTTGAACTTACGAAACCTCAAATACTTGGACCTTGGAGGCAATTTTTTCCATGGAAATATCCCTGAAAGCTATGGCAGTTTTGAAGAGTTGCAATATCTTTCTCTTGCCGGAAATGATTTGGTAGGGAAAATCCCAGGTGAGTTGGGAAATCTTACAAATTTGAGAGAAATTTACTTGGGTCATTACAATGTTTTCGAAGGTGGGATTCCATCCGAGCTCGGGAAGTTGGACAATTTGGTTATTATGGAGATTACAGACTGCGGTTTAGATGGTCAAATTCCTCATGAACTGGGGAATTTGAAGGCCTTGAATACTCTATATCTGCATACGAATCTACTCTCAGGTTCAGTCCCGAAGCAGTTAGGCAATTTAACGAACTTGGTCTTTCTTGATCTCTCCAACAATGCACTCACAGGAGAAATCCCATCTGAGTTTGTTGATCTCAAACAACTCAAGCTTTTCAACCTCTTCATGAACAAACTGCATGGATCTATTCCAAACTACGTAGTAGATTTTCTGAACTTGGAGAGCTTGGCGCTGTGGATGAACAACTTCACTGGCACAATCCCAAAGAATCTCGGCCAAAATGGGAGGCTTCAGCTCCTCGATCTGTCAACGAACAAGCTCACAGGTACGATCCCTCAGGATTTGTGTTCATCAAACCGGCTGAAAATACTGATTTTGATGAACAACTTCCTGTTTGGGCCAATCCCTGAGAGCTTGGGGACATGTGAAAGTCTTACAAAAGTGAGGTTAGGGCAGAACTATCTGAATGGAAGCATTCCCAATGGCTTTATTTACTTGCCTCAGCTAAATCTAGCAGAGTTTCAGAACAACTACCTTTCAGGTACACTTTCAGAGAATTGGGAGAGTTCATCAAAACCTATCAAATTAGGTCAACTTAATCTCTCTAATAATCTTCTATCTGGAACTTTACCATTTTCACTTTCTAATTTCTCTTCTCTACAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGTACCATCCCTCCATCCATTGGAGAACTTAGTGAACTACTAAAGCTCGATCTCAGCAGAAACTCACTTTCAAGTCAAATTCCACCTGAAATTGGGAATTGCATCCATCTCACTTACCTTGATTTGAGCAAGAACAACCTCTCTGGCCCAATTCCACCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCGAGAAATCACCTAAACCAATCGCTACCGAGATCAATAGAGGCCATGAAGAGCCTTACAATAGCCGATTTCTCCTTCAACGATTTCTCTGGAAAGCTACCGGAATCAGGACAACTTGCCTTCTTCAATGCTTCCTCCTTTGCAGGAAATCCTCAACTCTGCGGCTCTCTGCTCAACAACCCCTGCAACTTGGCAACAACAACAGCAGAATTAGGAAAAAATCCGGCCTATTTCAAGCTAATCTTCGCCCTCGGCCTACTGATTTTGTTTCTAGTGTTCGTCATAGCCGCAGTAGTAAAGGTAAAATCATTCAAAAGAAACGCCCTAAGTTCTTGGAAAATGACCTCATTCCAAAACCTGGATTTCACTGTCTACGACGTCCTGGAGTGCGTCAAAGACGGCAACGTGATCGGACGAGGCGGCGCCGGCATAGTCTACCACGGAAAAATGCCGAACGGAGTCGAAATCGCTGTGAAGAAACTCCTAGGGTTTGGTCCTAACAGTCACGATCACGGATTCCGAGCGGAGATCCAAACCCTAGGCAACATTCGACACCGAAACATTGTCAGATTACTAGCATTCTGCTCCAATAAAGACACAAATCTGCTCGTATACGAATACATGAGGAACGGAAGCTTAGGCGAAGCACTCCACGGCAAAAAAGCGCCGTTCCTTGGATGGAATTTGAGGTACAAAATCGCCATTGAAGCCGCCAAAGGTCTCTGCTACCTCCACCACGATTGCTCTCCACTAATCGTCCACCGAGACGTGAAATCGAACAACATTCTCTTGAATTCCAACTTCGAAGCTCATGTTGCCGATTTCGGACTCGCCAAGTTCATCTTCGACGGCGGCGCGTCGGAATGTATGTCGGTCGTCGCCGGATCTTATGGCTACATCGCTCCCGAGCTTTTAACAGGGCGTCGTCCAGTAGGAGATTTTGGAGATGGAATAGTTGACATAACACAATGGTGCAAAAGAATTTTAACAAATGGTGAGAACAAAAACGATATTATTTACATAGTTGACAAAAGGATCGGAATGGTATCCAAAGAGGAAGCAAAGCATTTGTTCTTTATAGCAATGTTGTGTGTGCAAGAAAACAGCTTAGAGAGACCAGCAATGAGAGAAGTGGTTCAAATGTTAGTTGAAGTTCCTCATGAGCCTCCAAATTGTTACCAATCTTCCTCTACTTCTTCTCCTTGTCAAATTTGA | 2877 | 42.96 | MLFFLVFTFFSLLGSSSSHSLVSDFHVLLALKQEFKFSHTNALSTWTASNFSSVCSWDRIKCSDKRVVSVDLTDLNLGGSVSPLISRLDQISELSVAGNYFSGAIEVVNLSYLRFLNISNNQFIGTLNWNFSNLPNLEVFDAYNNSYSALLPTEILNLRNLKYLDLGGNFFHGNIPESYGSFEELQYLSLAGNDLVGKIPGELGNLTNLREIYLGHYNVFEGGIPSELGKLDNLVIMEITDCGLDGQIPHELGNLKALNTLYLHTNLLSGSVPKQLGNLTNLVFLDLSNNALTGEIPSEFVDLKQLKLFNLFMNKLHGSIPNYVVDFLNLESLALWMNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPQDLCSSNRLKILILMNNFLFGPIPESLGTCESLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQNNYLSGTLSENWESSSKPIKLGQLNLSNNLLSGTLPFSLSNFSSLQILLLNGNQFSGTIPPSIGELSELLKLDLSRNSLSSQIPPEIGNCIHLTYLDLSKNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPRSIEAMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNLATTTAELGKNPAYFKLIFALGLLILFLVFVIAAVVKVKSFKRNALSSWKMTSFQNLDFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKDTNLLVYEYMRNGSLGEALHGKKAPFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFIFDGGASECMSVVAGSYGYIAPELLTGRRPVGDFGDGIVDITQWCKRILTNGENKNDIIYIVDKRIGMVSKEEAKHLFFIAMLCVQENSLERPAMREVVQMLVEVPHEPPNCYQSSSTSSPCQI | 958 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 25118503 | 25126434 | - | Sed0003095.3 | Sed07g1854 | 720718 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g1854 | 958 | SUPERFAMILY | RNI-like | 69 | 389 | - | - | |
| Sed07g1854 | 958 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 | 331 | 620 | - | - | |
| Sed07g1854 | 958 | Gene3D | Ribonuclease Inhibitor | 325 | 619 | IPR032675 | - | |
| Sed07g1854 | 958 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 806 | 818 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Sed07g1854 | 958 | Pfam | Leucine rich repeat N-terminal domain | 23 | 63 | IPR013210 | - | |
| Sed07g1854 | 958 | Gene3D | Phosphorylase Kinase; domain 1 | 650 | 761 | - | - | |
| Sed07g1854 | 958 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 7 | 939 | IPR050647 | - | |
| Sed07g1854 | 958 | Gene3D | Transferase(Phosphotransferase) domain 1 | 762 | 951 | - | - | |
| Sed07g1854 | 958 | Gene3D | Ribonuclease Inhibitor | 21 | 217 | IPR032675 | - | |
| Sed07g1854 | 958 | SMART | serkin_6 | 685 | 936 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed07g1854 | 958 | Gene3D | Ribonuclease Inhibitor | 218 | 324 | IPR032675 | - | |
| Sed07g1854 | 958 | SUPERFAMILY | Protein kinase-like (PK-like) | 673 | 937 | IPR011009 | - | |
| Sed07g1854 | 958 | SUPERFAMILY | L domain-like | 353 | 609 | - | - | |
| Sed07g1854 | 958 | PRINTS | Leucine-rich repeat signature | 354 | 367 | - | - | |
| Sed07g1854 | 958 | PRINTS | Leucine-rich repeat signature | 498 | 511 | - | - | |
| Sed07g1854 | 958 | ProSiteProfiles | Protein kinase domain profile. | 685 | 944 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed07g1854 | 958 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 | 219 | 324 | - | - | |
| Sed07g1854 | 958 | Pfam | Leucine Rich Repeat | 185 | 206 | IPR001611 | GO:0005515(InterPro) | |
| Sed07g1854 | 958 | Pfam | Leucine Rich Repeat | 113 | 134 | IPR001611 | GO:0005515(InterPro) | |
| Sed07g1854 | 958 | Pfam | Leucine Rich Repeat | 524 | 545 | IPR001611 | GO:0005515(InterPro) | |
| Sed07g1854 | 958 | Pfam | Leucine Rich Repeat | 160 | 181 | IPR001611 | GO:0005515(InterPro) | |
| Sed07g1854 | 958 | Pfam | Leucine Rich Repeat | 453 | 474 | IPR001611 | GO:0005515(InterPro) | |
| Sed07g1854 | 958 | Pfam | Leucine Rich Repeat | 281 | 302 | IPR001611 | GO:0005515(InterPro) | |
| Sed07g1854 | 958 | Pfam | Leucine Rich Repeat | 501 | 522 | IPR001611 | GO:0005515(InterPro) | |
| Sed07g1854 | 958 | Pfam | Leucine Rich Repeat | 476 | 498 | IPR001611 | GO:0005515(InterPro) | |
| Sed07g1854 | 958 | Pfam | Leucine Rich Repeat | 353 | 374 | IPR001611 | GO:0005515(InterPro) | |
| Sed07g1854 | 958 | SMART | LRR_typ_2 | 327 | 351 | IPR003591 | - | |
| Sed07g1854 | 958 | SMART | LRR_typ_2 | 255 | 278 | IPR003591 | - | |
| Sed07g1854 | 958 | SMART | LRR_typ_2 | 279 | 303 | IPR003591 | - | |
| Sed07g1854 | 958 | SMART | LRR_typ_2 | 498 | 522 | IPR003591 | - | |
| Sed07g1854 | 958 | SMART | LRR_typ_2 | 352 | 375 | IPR003591 | - | |
| Sed07g1854 | 958 | Pfam | Protein kinase domain | 687 | 891 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed07g1854 | 958 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | 654 | 761 | - | - | |
| Sed07g1854 | 958 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 | 131 | 218 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g1852 | Sed-Chr7:25118503 | Sed07g1854 | Sed-Chr7:25118503 | 3.60E-288 | dispersed | |
| Sed07g1854 | Sed-Chr7:25118503 | Sed13g1133 | Sed-Chr13:10680182 | 7.10E-241 | dispersed | |
| Sed07g1853 | Sed-Chr7:25118503 | Sed07g1854 | Sed-Chr7:25118503 | 1.70E-287 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 79528 | PF00069 | Pkinase | 6.30E-34 | CL0016 | Sed | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g1854 | - | - | - | 0.0 |