Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1860 ATGGAGGGAATGCCGCACCCAATACCCCGCACAGTGGATGAGGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCCTCATCAAAGCTCTCACCGCCGATGTTGACAAGTTTTTCCAGCAGTGCGATCCCGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAACTCCCTGAACCAGCGTTGGGTATAAACTTTGCTAGGGATGGAATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGATTCGTGGTTGCTTGCTGTTTCATTCTATTTTGGTGCTCGTTTTGGGTTTGGAAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAATGGAAATGGTAAACAGTCAAAAGAACAGTCAGCAACCCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGATGTCCCGGCAATTGGAGTCCCATAACAAGGGAGTGAAGACGTCTCCACCACCGAAAGAGGATGAAGATAGTGGGGACGATGAGGATGAAGAAGAAGATGATGAACAGGGTGCAACGTGTGGGGCTTGTGGGGACAACTATGGCAATGACGAGTTTTGGATTTGTTGCGATATATGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 768 47.53 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVDKFFQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQLINDLPSVFEVVNGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHNKGVKTSPPPKEDEDSGDDEDEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26902173 26910400 + Sed0004889.1 Sed07g1860 720724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1860 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Sed07g1860 255 Pfam PHD-finger 202 248 IPR019787 -
Sed07g1860 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Sed07g1860 255 SMART PHD_3 201 249 IPR001965 -
Sed07g1860 255 CDD PHD_AL_plant 202 251 IPR044104 -
Sed07g1860 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Sed07g1860 255 MobiDBLite consensus disorder prediction 141 162 - -
Sed07g1860 255 MobiDBLite consensus disorder prediction 183 200 - -
Sed07g1860 255 MobiDBLite consensus disorder prediction 141 201 - -
Sed07g1860 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Sed07g1860 255 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed07g1860 255 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed07g1860 255 MobiDBLite consensus disorder prediction 163 182 - -
Sed07g1860 255 FunFam PHD finger alfin-like protein 194 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1860 Sed-Chr7:26902173 Sed07g1863 Sed-Chr7:27484751 4.40E-137 dispersed
Sed07g1860 Sed-Chr7:26902173 Sed07g1861 Sed-Chr7:26902173 1.10E-135 tandem
Sed13g1088 Sed-Chr13:9707195 Sed07g1860 Sed-Chr7:26902173 8.90E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39134 PF12165 Alfin 8.10E-67 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1860 K26274 - csv:101212601 458.759