Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1860 | ATGGAGGGAATGCCGCACCCAATACCCCGCACAGTGGATGAGGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCCTCATCAAAGCTCTCACCGCCGATGTTGACAAGTTTTTCCAGCAGTGCGATCCCGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAACTCCCTGAACCAGCGTTGGGTATAAACTTTGCTAGGGATGGAATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGATTCGTGGTTGCTTGCTGTTTCATTCTATTTTGGTGCTCGTTTTGGGTTTGGAAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAATGGAAATGGTAAACAGTCAAAAGAACAGTCAGCAACCCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGATGTCCCGGCAATTGGAGTCCCATAACAAGGGAGTGAAGACGTCTCCACCACCGAAAGAGGATGAAGATAGTGGGGACGATGAGGATGAAGAAGAAGATGATGAACAGGGTGCAACGTGTGGGGCTTGTGGGGACAACTATGGCAATGACGAGTTTTGGATTTGTTGCGATATATGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA | 768 | 47.53 | MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVDKFFQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQLINDLPSVFEVVNGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHNKGVKTSPPPKEDEDSGDDEDEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV | 255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 26902173 | 26910400 | + | Sed0004889.1 | Sed07g1860 | 720724 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1860 | 255 | SUPERFAMILY | FYVE/PHD zinc finger | 190 | 252 | IPR011011 | - | |
Sed07g1860 | 255 | Pfam | PHD-finger | 202 | 248 | IPR019787 | - | |
Sed07g1860 | 255 | ProSiteProfiles | Zinc finger PHD-type profile. | 199 | 251 | IPR019787 | - | |
Sed07g1860 | 255 | SMART | PHD_3 | 201 | 249 | IPR001965 | - | |
Sed07g1860 | 255 | CDD | PHD_AL_plant | 202 | 251 | IPR044104 | - | |
Sed07g1860 | 255 | ProSitePatterns | Zinc finger PHD-type signature. | 202 | 248 | IPR019786 | - | |
Sed07g1860 | 255 | MobiDBLite | consensus disorder prediction | 141 | 162 | - | - | |
Sed07g1860 | 255 | MobiDBLite | consensus disorder prediction | 183 | 200 | - | - | |
Sed07g1860 | 255 | MobiDBLite | consensus disorder prediction | 141 | 201 | - | - | |
Sed07g1860 | 255 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 250 | IPR013083 | - | |
Sed07g1860 | 255 | PANTHER | CPG BINDING PROTEIN | 9 | 254 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Sed07g1860 | 255 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Sed07g1860 | 255 | MobiDBLite | consensus disorder prediction | 163 | 182 | - | - | |
Sed07g1860 | 255 | FunFam | PHD finger alfin-like protein | 194 | 250 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1860 | Sed-Chr7:26902173 | Sed07g1863 | Sed-Chr7:27484751 | 4.40E-137 | dispersed | |
Sed07g1860 | Sed-Chr7:26902173 | Sed07g1861 | Sed-Chr7:26902173 | 1.10E-135 | tandem | |
Sed13g1088 | Sed-Chr13:9707195 | Sed07g1860 | Sed-Chr7:26902173 | 8.90E-116 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39134 | PF12165 | Alfin | 8.10E-67 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1860 | K26274 | - | csv:101212601 | 458.759 |