Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1861 | ATGGAGGGAATGCCGCACCCAATACCCCGCACAGTGGATGAGGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCCTCATCAAAGCTCTCACCGCCGATGTTGACAAGTTTTTCCAGCAGTGCGATCCCGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAACTCCCTGAACCAGCGTTGGGTATAAACTTTGCTAGGGATGGAATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGATTCGTGGTTGCTTGCTGTTTCATTCTATTTTGGTGCTCGTTTTGGGTTTGGAAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAATGGAAATGGTAAACAGTCAAAAGAACAGTCAGCAACCCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGATGCAGTCCCGGCAATTGGAGTCCCATAACAAGGGAGTGAAGACGTCTCCACCACCGAAAGAGGATGAAGATAGTGGGGACGATGAGGATGAAGAAGAAGATGATGAACAGGGTGCAACGTGTGGGGCTTGTGGGGACAACTATGGCAATGACGAGTTTTGGATTTGTTGCGATATATGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA | 771 | 47.6 | MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVDKFFQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQLINDLPSVFEVVNGNGKQSKEQSATHNNGSKSKSSGKMQSRQLESHNKGVKTSPPPKEDEDSGDDEDEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV | 256 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 26902173 | 26910400 | + | Sed0004889.2 | Sed07g1861 | 720725 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1861 | 256 | ProSitePatterns | Zinc finger PHD-type signature. | 203 | 249 | IPR019786 | - | |
Sed07g1861 | 256 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 251 | IPR013083 | - | |
Sed07g1861 | 256 | ProSiteProfiles | Zinc finger PHD-type profile. | 200 | 252 | IPR019787 | - | |
Sed07g1861 | 256 | SMART | PHD_3 | 202 | 250 | IPR001965 | - | |
Sed07g1861 | 256 | CDD | PHD_AL_plant | 203 | 252 | IPR044104 | - | |
Sed07g1861 | 256 | MobiDBLite | consensus disorder prediction | 141 | 202 | - | - | |
Sed07g1861 | 256 | FunFam | PHD finger alfin-like protein | 195 | 251 | - | - | |
Sed07g1861 | 256 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Sed07g1861 | 256 | Pfam | PHD-finger | 203 | 249 | IPR019787 | - | |
Sed07g1861 | 256 | MobiDBLite | consensus disorder prediction | 141 | 174 | - | - | |
Sed07g1861 | 256 | SUPERFAMILY | FYVE/PHD zinc finger | 191 | 253 | IPR011011 | - | |
Sed07g1861 | 256 | PANTHER | CPG BINDING PROTEIN | 9 | 255 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Sed07g1861 | 256 | MobiDBLite | consensus disorder prediction | 184 | 201 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1861 | Sed-Chr7:26902173 | Sed07g1864 | Sed-Chr7:27484751 | 1.50E-137 | dispersed | |
Sed07g1860 | Sed-Chr7:26902173 | Sed07g1861 | Sed-Chr7:26902173 | 1.10E-135 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39135 | PF12165 | Alfin | 8.20E-67 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1861 | K26274 | - | csv:101212601 | 451.825 |