Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1861 ATGGAGGGAATGCCGCACCCAATACCCCGCACAGTGGATGAGGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCCTCATCAAAGCTCTCACCGCCGATGTTGACAAGTTTTTCCAGCAGTGCGATCCCGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAACTCCCTGAACCAGCGTTGGGTATAAACTTTGCTAGGGATGGAATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGATTCGTGGTTGCTTGCTGTTTCATTCTATTTTGGTGCTCGTTTTGGGTTTGGAAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAATGGAAATGGTAAACAGTCAAAAGAACAGTCAGCAACCCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGATGCAGTCCCGGCAATTGGAGTCCCATAACAAGGGAGTGAAGACGTCTCCACCACCGAAAGAGGATGAAGATAGTGGGGACGATGAGGATGAAGAAGAAGATGATGAACAGGGTGCAACGTGTGGGGCTTGTGGGGACAACTATGGCAATGACGAGTTTTGGATTTGTTGCGATATATGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 771 47.6 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVDKFFQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQLINDLPSVFEVVNGNGKQSKEQSATHNNGSKSKSSGKMQSRQLESHNKGVKTSPPPKEDEDSGDDEDEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26902173 26910400 + Sed0004889.2 Sed07g1861 720725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1861 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Sed07g1861 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 251 IPR013083 -
Sed07g1861 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Sed07g1861 256 SMART PHD_3 202 250 IPR001965 -
Sed07g1861 256 CDD PHD_AL_plant 203 252 IPR044104 -
Sed07g1861 256 MobiDBLite consensus disorder prediction 141 202 - -
Sed07g1861 256 FunFam PHD finger alfin-like protein 195 251 - -
Sed07g1861 256 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed07g1861 256 Pfam PHD-finger 203 249 IPR019787 -
Sed07g1861 256 MobiDBLite consensus disorder prediction 141 174 - -
Sed07g1861 256 SUPERFAMILY FYVE/PHD zinc finger 191 253 IPR011011 -
Sed07g1861 256 PANTHER CPG BINDING PROTEIN 9 255 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed07g1861 256 MobiDBLite consensus disorder prediction 184 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1861 Sed-Chr7:26902173 Sed07g1864 Sed-Chr7:27484751 1.50E-137 dispersed
Sed07g1860 Sed-Chr7:26902173 Sed07g1861 Sed-Chr7:26902173 1.10E-135 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39135 PF12165 Alfin 8.20E-67 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1861 K26274 - csv:101212601 451.825