Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1863 ATGGAGGGAATGCCGCACCCAATACCCCGCACAGTGGATGAGGTCTACAGCGACTTCAAAGGCAGACGTGCCGGCCTCATCAAAGCTCTCACCGCCGATGTTGACAAGTTTTTCCAGCAGTGCGATCCCGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAACTCCCTGAACCAGCGTTGGGTATAAACTTTGCTAGGGATGGAATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGATTCGTGGTTGCTTGCTGTTTCATTCTATTTTGGTGCTCGTTTTGGGTTTGGAAAGAATGAAAGGAAGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAATGGAAATGGTAAACAGTCAAAAGAACAGTCAGCAACCCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGATGTCCCGGCAATTGGAGTCCCATAACAAGGGAGTGAAGACGTCTCCACCACCGAAAGAGGATGAAGATAGCGGGGACGATGAGGATGAAGAAGAAGATGATGAACAGGGTGCAACGTGTGGGGCTTGTGGGGACAACTATGGCAATGACGAGTTTTGGATTTGTTGCGATATATGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 768 47.66 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVDKFFQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQLINDLPSVFEVVNGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHNKGVKTSPPPKEDEDSGDDEDEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27484751 27492896 - Sed0026386.1 Sed07g1863 720727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1863 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Sed07g1863 255 Pfam PHD-finger 202 248 IPR019787 -
Sed07g1863 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Sed07g1863 255 SMART PHD_3 201 249 IPR001965 -
Sed07g1863 255 CDD PHD_AL_plant 202 251 IPR044104 -
Sed07g1863 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Sed07g1863 255 MobiDBLite consensus disorder prediction 141 162 - -
Sed07g1863 255 MobiDBLite consensus disorder prediction 183 200 - -
Sed07g1863 255 MobiDBLite consensus disorder prediction 141 201 - -
Sed07g1863 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Sed07g1863 255 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed07g1863 255 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed07g1863 255 MobiDBLite consensus disorder prediction 163 182 - -
Sed07g1863 255 FunFam PHD finger alfin-like protein 194 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1863 K26274 - - csv:101212601 458.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1860 Sed-Chr7:26902173 Sed07g1863 Sed-Chr7:27484751 4.40E-137 dispersed
Sed07g1863 Sed-Chr7:27484751 Sed13g1088 Sed-Chr13:9707195 1.60E-115 dispersed
Sed07g1863 Sed-Chr7:27484751 Sed07g1864 Sed-Chr7:27484751 1.10E-135 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g1860 . 1 252 Alfin-like Transcription Factor Family AT1G14510 81.7 1.5e-110 396.7
Sed07g1863 . 1 252 Alfin-like Transcription Factor Family AT1G14510 81.7 1.5e-110 396.7
Sed07g1861 . 1 253 Alfin-like Transcription Factor Family AT1G14510 81.4 2.2e-109 392.9
Sed07g1864 . 1 253 Alfin-like Transcription Factor Family AT1G14510 81.4 2.2e-109 392.9
Sed13g1088 . 1 238 Alfin-like Transcription Factor Family AT1G14510 72.3 8.5e-101 364.4
Sed03g1808 . 9 248 Alfin-like Transcription Factor Family AT1G14510 68.4 1.1e-92 337.4
Sed09g1666 . 10 249 Alfin-like Transcription Factor Family AT1G14510 66.8 4.2e-92 335.5
Sed11g0863 . 1 256 Alfin-like Transcription Factor Family AT1G14510 73.0 8.0e-91 331.3
Sed08g1790 . 1 236 Alfin-like Transcription Factor Family AT1G14510 70.6 1.0e-90 330.9
Sed04g0789 . 11 260 Alfin-like Transcription Factor Family AT1G14510 68.5 2.2e-88 323.2
Sed08g1789 . 1 256 Alfin-like Transcription Factor Family AT1G14510 68.8 1.8e-87 320.1
Sed07g2570 . 8 245 Alfin-like Transcription Factor Family AT1G14510 60.2 1.6e-78 290.4
Sed07g2569 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.2 2.7e-78 289.7
Sed04g2905 . 8 246 Alfin-like Transcription Factor Family AT1G14510 56.8 4.0e-74 275.8
Sed08g1791 . 37 249 Alfin-like Transcription Factor Family AT1G14510 68.5 1.5e-68 257.3
Sed03g1808 . 1 250 Alfin-like Transcription Factor Family AT5G26210 74.4 3.9e-109 392.1
Sed11g0863 . 1 258 Alfin-like Transcription Factor Family AT5G26210 80.6 1.2e-102 370.5
Sed08g1789 . 1 259 Alfin-like Transcription Factor Family AT5G26210 79.2 4.6e-102 368.6
Sed08g1790 . 1 239 Alfin-like Transcription Factor Family AT5G26210 75.3 2.3e-101 366.3
Sed09g1666 . 1 252 Alfin-like Transcription Factor Family AT5G26210 64.5 8.3e-96 347.8
Sed04g0789 . 5 262 Alfin-like Transcription Factor Family AT5G26210 69.0 5.1e-93 338.6
Sed07g1860 . 9 254 Alfin-like Transcription Factor Family AT5G26210 71.5 1.2e-91 334.0
Sed07g1863 . 9 254 Alfin-like Transcription Factor Family AT5G26210 71.5 1.2e-91 334.0
Sed07g1861 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.6 2.8e-91 332.8
Sed07g1864 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.6 2.8e-91 332.8
Sed13g1088 . 1 240 Alfin-like Transcription Factor Family AT5G26210 63.4 1.9e-87 320.1
Sed08g1791 . 37 252 Alfin-like Transcription Factor Family AT5G26210 80.1 7.6e-81 298.1
Sed07g2570 . 7 247 Alfin-like Transcription Factor Family AT5G26210 57.2 2.2e-80 296.6
Sed07g2569 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 2.9e-80 296.2
Sed04g2905 . 7 248 Alfin-like Transcription Factor Family AT5G26210 60.7 2.7e-78 289.7
Sed03g1808 . 1 250 Alfin-like Transcription Factor Family AT3G42790 69.7 1.4e-100 363.6
Sed08g1790 . 3 239 Alfin-like Transcription Factor Family AT3G42790 77.5 2.5e-100 362.8
Sed11g0863 . 1 258 Alfin-like Transcription Factor Family AT3G42790 76.4 1.0e-98 357.5
Sed08g1789 . 3 259 Alfin-like Transcription Factor Family AT3G42790 78.6 3.0e-98 355.9
Sed09g1666 . 1 252 Alfin-like Transcription Factor Family AT3G42790 62.5 5.0e-93 338.6
Sed04g0789 . 4 262 Alfin-like Transcription Factor Family AT3G42790 67.3 2.1e-91 333.2
Sed07g1861 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.6 4.3e-89 325.5
Sed07g1864 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.6 4.3e-89 325.5
Sed07g1860 . 9 254 Alfin-like Transcription Factor Family AT3G42790 70.9 9.7e-89 324.3
Sed07g1863 . 9 254 Alfin-like Transcription Factor Family AT3G42790 70.9 9.7e-89 324.3
Sed13g1088 . 8 240 Alfin-like Transcription Factor Family AT3G42790 61.4 4.7e-83 305.4
Sed07g2569 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 1.3e-80 297.4
Sed07g2570 . 7 247 Alfin-like Transcription Factor Family AT3G42790 59.2 6.3e-80 295.0
Sed04g2905 . 7 248 Alfin-like Transcription Factor Family AT3G42790 62.2 2.0e-78 290.0
Sed08g1791 . 37 252 Alfin-like Transcription Factor Family AT3G42790 77.3 4.2e-76 282.3
Sed07g2569 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.4 2.1e-112 402.9
Sed07g2570 . 1 247 Alfin-like Transcription Factor Family AT5G05610 76.2 2.5e-110 396.0
Sed04g2905 . 1 248 Alfin-like Transcription Factor Family AT5G05610 72.7 4.2e-105 378.6
Sed03g1808 . 8 250 Alfin-like Transcription Factor Family AT5G05610 64.3 2.2e-90 329.7
Sed09g1666 . 10 252 Alfin-like Transcription Factor Family AT5G05610 65.6 1.0e-87 320.9
Sed08g1790 . 8 238 Alfin-like Transcription Factor Family AT5G05610 61.4 1.8e-84 310.1
Sed04g0789 . 11 262 Alfin-like Transcription Factor Family AT5G05610 60.7 9.0e-84 307.8
Sed11g0863 . 5 258 Alfin-like Transcription Factor Family AT5G05610 59.8 9.0e-84 307.8
Sed07g1860 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.2e-83 307.4
Sed07g1863 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.2e-83 307.4
Sed07g1861 . 9 255 Alfin-like Transcription Factor Family AT5G05610 61.9 1.5e-83 307.0
Sed07g1864 . 9 255 Alfin-like Transcription Factor Family AT5G05610 61.9 1.5e-83 307.0
Sed13g1088 . 8 240 Alfin-like Transcription Factor Family AT5G05610 63.0 5.9e-83 305.1
Sed08g1789 . 8 258 Alfin-like Transcription Factor Family AT5G05610 59.1 1.7e-82 303.5
Sed08g1791 . 37 251 Alfin-like Transcription Factor Family AT5G05610 58.3 3.8e-66 249.2
Sed07g2569 . 43 240 Alfin-like Transcription Factor Family AT3G11200 81.6 5.8e-96 348.2
Sed07g2570 . 43 247 Alfin-like Transcription Factor Family AT3G11200 78.8 7.1e-94 341.3
Sed04g2905 . 43 248 Alfin-like Transcription Factor Family AT3G11200 73.2 1.3e-87 320.5
Sed03g1808 . 44 250 Alfin-like Transcription Factor Family AT3G11200 63.3 1.8e-73 273.5
Sed09g1666 . 44 252 Alfin-like Transcription Factor Family AT3G11200 62.2 9.1e-73 271.2
Sed08g1790 . 44 238 Alfin-like Transcription Factor Family AT3G11200 62.1 2.7e-69 259.6
Sed07g1860 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.5 6.1e-69 258.5
Sed07g1863 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.5 6.1e-69 258.5
Sed07g1861 . 44 255 Alfin-like Transcription Factor Family AT3G11200 63.2 7.9e-69 258.1
Sed07g1864 . 44 255 Alfin-like Transcription Factor Family AT3G11200 63.2 7.9e-69 258.1
Sed04g0789 . 37 255 Alfin-like Transcription Factor Family AT3G11200 61.2 1.8e-68 256.9
Sed11g0863 . 45 258 Alfin-like Transcription Factor Family AT3G11200 61.2 1.8e-68 256.9
Sed13g1088 . 44 240 Alfin-like Transcription Factor Family AT3G11200 63.4 1.1e-67 254.2
Sed08g1789 . 44 258 Alfin-like Transcription Factor Family AT3G11200 59.1 2.2e-66 250.0
Sed08g1791 . 37 251 Alfin-like Transcription Factor Family AT3G11200 59.1 2.2e-66 250.0
Sed07g1860 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.9 1.3e-75 280.8
Sed07g1861 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.9 1.3e-75 280.8
Sed07g1863 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.9 1.3e-75 280.8
Sed07g1864 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.9 1.3e-75 280.8
Sed13g1088 . 1 158 Alfin-like Transcription Factor Family AT2G02470 79.5 1.1e-68 257.7
Sed03g1808 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.9 1.3e-64 244.2
Sed08g1789 . 1 149 Alfin-like Transcription Factor Family AT2G02470 79.2 8.4e-64 241.5
Sed08g1790 . 1 145 Alfin-like Transcription Factor Family AT2G02470 78.6 1.1e-63 241.1
Sed11g0863 . 1 150 Alfin-like Transcription Factor Family AT2G02470 78.7 2.1e-62 236.9
Sed04g0789 . 11 163 Alfin-like Transcription Factor Family AT2G02470 74.5 3.5e-62 236.1
Sed09g1666 . 10 160 Alfin-like Transcription Factor Family AT2G02470 74.2 6.7e-61 231.9
Sed07g2570 . 8 161 Alfin-like Transcription Factor Family AT2G02470 68.2 4.2e-55 212.6
Sed07g2569 . 8 155 Alfin-like Transcription Factor Family AT2G02470 70.2 7.1e-55 211.8
Sed04g2905 . 8 136 Alfin-like Transcription Factor Family AT2G02470 72.5 4.3e-52 202.6
Sed08g1791 . 37 142 Alfin-like Transcription Factor Family AT2G02470 84.0 6.1e-46 182.2
Sed03g1808 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 8.2e-72 267.7
Sed11g0863 . 1 154 Alfin-like Transcription Factor Family AT5G20510 79.9 9.0e-71 264.2
Sed08g1789 . 3 150 Alfin-like Transcription Factor Family AT5G20510 81.1 7.7e-70 261.2
Sed08g1790 . 3 149 Alfin-like Transcription Factor Family AT5G20510 81.0 2.9e-69 259.2
Sed04g0789 . 1 161 Alfin-like Transcription Factor Family AT5G20510 75.8 8.5e-69 257.7
Sed07g1860 . 3 172 Alfin-like Transcription Factor Family AT5G20510 70.3 1.5e-65 246.9
Sed07g1863 . 3 172 Alfin-like Transcription Factor Family AT5G20510 70.3 1.5e-65 246.9
Sed07g1861 . 3 173 Alfin-like Transcription Factor Family AT5G20510 71.1 2.5e-65 246.1
Sed07g1864 . 3 173 Alfin-like Transcription Factor Family AT5G20510 71.1 2.5e-65 246.1
Sed09g1666 . 1 162 Alfin-like Transcription Factor Family AT5G20510 72.1 4.3e-65 245.4
Sed13g1088 . 3 160 Alfin-like Transcription Factor Family AT5G20510 67.5 1.0e-58 224.2
Sed07g2570 . 7 163 Alfin-like Transcription Factor Family AT5G20510 63.8 9.1e-55 211.1
Sed07g2569 . 7 157 Alfin-like Transcription Factor Family AT5G20510 65.0 7.7e-54 208.0
Sed04g2905 . 7 145 Alfin-like Transcription Factor Family AT5G20510 66.4 1.2e-51 200.7
Sed08g1791 . 37 143 Alfin-like Transcription Factor Family AT5G20510 81.3 3.7e-48 189.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39136 PF12165 Alfin 8.10E-67 No_clan Sed TF