Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1869 ATGGGATTGGTTTATGCGAAGTGTAATTTGTTTATGATCATTTTCATGGTTGTTGGTGGGTTCTTCGTCCATGGGAATGATGGTGGTGGTTGGTTTGATGCCCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGTCTTGGAGGAGCATGTGGTTACGACAACACATTCCACGCCGGATTTGGAATAAACACGGCGGCGGTGAGCGGTGCACTTTTCAGAGGCGGAGAGGCCTGCGGGGCTTGCTTCCTGGTCATTTGCAACTACAACGCCGACCCCAAGTGGTGCCTCCGCCGCCGCACCGTCACCGTCACCGCCACAAACTTCTGCCCCTCCAACAACAACGGCGGCTGGTGCGACCCTCCTCGTTCCCATTTCGACATGTCGTCACCTGCTTTTCTTACCATTGCTCGTCAAGGCAACGAAGGGATTGTCCCTGTCCTTTACAAGAGGGTAAGTTGTAGAAGAAAGGGAGGAGTTCGATTCACATTAAAAGGGCAATCAAACTTCAACATGGTGATGATATCCAACGTTGGTGGTAGTGGTGATGTGAAGGCTGCATGGGTCAAGGGGTCGAGGATGACGACGTGGATGCCGATGCACCGAAATTGGGGGGCGAACTGGCAAGCGAACGTCGACCTTCGAAGCCAAAGGATGTCATTTAAGCTCACTCTAGTTGATGGAACAACATTGGAGTTGTCCAATGTTGTTCCTTCCTCTTGGAGGTTTGGCCAGACATTTTCTTCCATGAATCAGTTTTCTTAG 768 50.52 MGLVYAKCNLFMIIFMVVGGFFVHGNDGGGWFDAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGALFRGGEACGACFLVICNYNADPKWCLRRRTVTVTATNFCPSNNNGGWCDPPRSHFDMSSPAFLTIARQGNEGIVPVLYKRVSCRRKGGVRFTLKGQSNFNMVMISNVGGSGDVKAAWVKGSRMTTWMPMHRNWGANWQANVDLRSQRMSFKLTLVDGTTLELSNVVPSSWRFGQTFSSMNQFS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29027593 29032134 + Sed0022158.1 Sed07g1869 720733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1869 255 Gene3D - 160 254 IPR036749 -
Sed07g1869 255 CDD DPBB_EXPA_N 30 155 - -
Sed07g1869 255 PRINTS Expansin signature 207 228 IPR002963 GO:0009664(InterPro)
Sed07g1869 255 PRINTS Expansin signature 236 252 IPR002963 GO:0009664(InterPro)
Sed07g1869 255 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Sed07g1869 255 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Sed07g1869 255 PRINTS Expansin signature 159 171 IPR002963 GO:0009664(InterPro)
Sed07g1869 255 PRINTS Expansin signature 171 192 IPR002963 GO:0009664(InterPro)
Sed07g1869 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Sed07g1869 255 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Sed07g1869 255 PANTHER EXPANSIN-A15 13 251 IPR002963 GO:0009664(InterPro)
Sed07g1869 255 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Sed07g1869 255 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Sed07g1869 255 Pfam Lytic transglycolase 66 150 IPR009009 -
Sed07g1869 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 160 IPR007112 -
Sed07g1869 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Sed07g1869 255 Gene3D - 21 156 IPR036908 -
Sed07g1869 255 SUPERFAMILY Barwin-like endoglucanases 30 178 IPR036908 -
Sed07g1869 255 SMART dpbb_1 66 150 IPR007112 -
Sed07g1869 255 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Sed07g1869 255 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576(InterPro)
Sed07g1869 255 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Sed07g1869 255 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Sed07g1869 255 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576(InterPro)
Sed07g1869 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1869 Sed-Chr7:29027593 Sed11g1104 Sed-Chr11:26746562 3.40E-73 dispersed
Sed07g1869 Sed-Chr7:29027593 Sed08g0227 Sed-Chr8:1292903 7.80E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1869 - - - 0.0