Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1885 ATGGCCACCACCACCACCACTTTCGACCATCACACACCCACCTCCTCCGATGAAGAATTAGATGAAGAAGAAGACAAATCCAACGGAGGGTTCTGCCATAACCTATATGGCTTCGGGTCGGTACTGGATCCGAGAGATAAATGGGTCCGAGAATGGAATCGGGTCTTCCTCCTGGTGTGCGCGGCGGGGCTCTTCGTGGACCCTCTCTTCCTATACACACTCTCCATAAGCGAGTCGTGGATGTGTCTCTTCGTCGACGGCTGGCTCGCTATCACCGTCACCGTCCTCCGCTGCATGGGTGACACTTTGCACCTGTGGAACATCTGGCTCCAGCTCAAGACTGGCACTAGATCTTCCTTCTCCAGCAGCAGCGAAGGCGGCAGCGTCACACCAGCGGACAAAAGAGGTGGCCTCAGAGATACCACCCCACGCACCGTCGCTCTTCGCTATTTTAAGTCCAAGAAAGGCTTCTTCTTTGATCTCTTTGTTATTCTTCCTTTTCCTCAGGTTCTACTATGGGTAGTAATTCCTTCTATAATGAAAGAAGGATCAGTGACATTGGTGATGACAGTGTTGTTGATAATCTTTCTATTTCAATATTTGCCAAAACTATACCACTCCATTTGCCTGTTGCGGCGCCTCCAAAACCTGTCAGGCTACATATTTGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCTTACTTCGTTGCAGCCCATGCTGCAGGAGCATGCTGGTATTTGTTGGGAGTACAAAGAGCAGCAAAGTGCCTAAAACAGCAATGCAGAGAAACCAGCAGCTGCGGGATGAGGTTGTTGTCATGCAAGGACCCAATATTCTATGGGTCAACAAACCTGGGGAGAGACAGAGCAAGGTTTGATTGGGGAAAGAACAGGCATCCCAGATTAATGTGTTTGGACACTGCTGACAATTTTGATTATGGAGCTTATAAATGGACTGTTCAGCTTGTTGTCAATCAGAGCCGCTTGGAGAAGATCCTTTTTCCCATCTTTTGGGGCCTCATGACTCTTAGTACCTTTGGGAACTTGGAGAGCACCACAGAATGGCTGGAAGTAGTGTTTAATATCATTGTTCTCACCAGTGGACTCCTTTTGGTCACCATGTTGATTGGAAATATCAAGGTGTTTCTGCATGCAACAACGTCAAAGAAACAAGGAATGCAGCTAAGGATGAGGAACCTGGAGTGGTGGATGAGGAAGCGACGGCTGCCACAAGGCTTCCGGCAGCGGGTTCGGAACTATGAGAGACAGCGGTGGGCGGCAATGCGTGGTGTGGATGAGTGCGAGATGATCAGAAACCTACCGGAAGGGCTCCGACGAGACATCAAGTATCACCTTTGCTTGGATCTGGTTAGGCAGGTACCATTGTTTCAACATATGGATGATCTTGTTCTTGAGAACATTTGTGATCGTGTGAAGTCCCTCATCTTCACGAAGGACGAAACTATAACGAGAGAAGGAGACCCAGTACAAAGAATGTTATTCGTAGTACGAGGGCATCTCCAAAGCAGCCAAGTCCTACGGGACGGCGTGAAGAGTTGCTGCATGTTGGGCCCTGGCAACTTCAGTGGCGACGAGCTTCTGTCGTGGTGCCTCCGCCGGCCCTTCATCGAGCGTCTCCCTCCCTCCTCGTGCACCCTTGTCACTCTCGAGACCACTGAGGCCTTTGGGCTGGAGGCCGAGGATGTCAAGTACGTCACTCAGCACTTTCGCTACACCTTCGTCAACGACAAGGTCAAGCGCAGCGCCCGCTACTACTCTCCCGGGTGGCGCACTTGGGCTGCCGTCGCCATCCAGCTCGCTTGGCGCCGCTATCGCCACCGCCTCACCCTCACCTCCTTGTCTTTTATTCGTCCTCGCCGCCCCCTCTCCCGCTGCTCTTCCTTGGGCGAGGATCGCCTCCGCCTCTACACGGCGTTGCTTACTTCTCCTAAGCCTAATCACGACCATTTTGATTTTTGA 1986 51.46 MATTTTTFDHHTPTSSDEELDEEEDKSNGGFCHNLYGFGSVLDPRDKWVREWNRVFLLVCAAGLFVDPLFLYTLSISESWMCLFVDGWLAITVTVLRCMGDTLHLWNIWLQLKTGTRSSFSSSSEGGSVTPADKRGGLRDTTPRTVALRYFKSKKGFFFDLFVILPFPQVLLWVVIPSIMKEGSVTLVMTVLLIIFLFQYLPKLYHSICLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKQQCRETSSCGMRLLSCKDPIFYGSTNLGRDRARFDWGKNRHPRLMCLDTADNFDYGAYKWTVQLVVNQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQGMQLRMRNLEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKDETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEAEDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNHDHFDF 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30608270 30619697 + Sed0006834.1 Sed07g1885 720749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1885 661 SUPERFAMILY Voltage-gated potassium channels 43 385 - -
Sed07g1885 661 Gene3D Helix hairpin bin 389 455 - -
Sed07g1885 661 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 40 618 - -
Sed07g1885 661 ProSiteProfiles cAMP/cGMP binding motif profile. 464 543 IPR000595 -
Sed07g1885 661 FunFam cyclic nucleotide-gated ion channel 4 462 580 - -
Sed07g1885 661 CDD CAP_ED 464 570 IPR000595 -
Sed07g1885 661 MobiDBLite consensus disorder prediction 117 138 - -
Sed07g1885 661 Pfam Cyclic nucleotide-binding domain 485 574 IPR000595 -
Sed07g1885 661 MobiDBLite consensus disorder prediction 1 27 - -
Sed07g1885 661 FunFam Cyclic nucleotide-gated ion channel 1 391 455 - -
Sed07g1885 661 SUPERFAMILY cAMP-binding domain-like 390 578 IPR018490 -
Sed07g1885 661 Gene3D Jelly Rolls 462 580 IPR014710 -
Sed07g1885 661 Gene3D - 131 386 - -
Sed07g1885 661 Pfam Ion transport protein 147 381 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1885 Sed-Chr7:30608270 Sed11g2035 Sed-Chr11:34389559 1.00E-185 dispersed
Sed07g1885 Sed-Chr7:30608270 Sed05g2841 Sed-Chr5:39547040 8.20E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1885 K05391 - csv:101207531 1177.93