Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1908 ATGGATGTTACAACAGGAAATCTTACACTCTACAGCCACAACAGCACCATCCTTGTTTGGTCTGCAAGGTTACTGAGAAAAGTCCCCAATGGGGTTTTGCAGCTATTGGACAATGGAAATCTTGTTCTGAGAGATGGGGATGATGATCAAAATCCTCAAAACTACTCATGGCAAAGCTTTGATTACCCAACCGACACTCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAACAACATTAACAGAAGATTGTCTGCTTGGAAAAATCCCAATGACCCATCTCCTGGAACCTTCAGTTGGGAGATGGAGCTTCATCAGTATCCTGAGACAGTGATGTGGAATGGTTCCAAAGAATACTTTAGGCATGGCCCTTGGAATGGCCTCACAATCACTAGTTGGCCTCTAGGCTTAGCCCCAAACTTGAAACTCCAATTTGTTTCCAATCAGGATGAGGTTTACTACGAATACTCCGTAAAAGAGGAGTCTTCTGATACAGTGATGCTGGTGTTGAACCAGTCCATTTTCGTCCGGATCGTCTACTTATGGTCTGTAACCGATAGAAACTGGATAGTCTACAATTCATTACCAAGAGATTTCTGTGACAATTATGCTTTGTGTGGTCCCTTTGGATATTGTGATTTTAGAGTAGTTCCATCTTGTTTTTGTCTACAAGGGTTTAAGCCAGTATCACCCAAGAATTGGAAAGCAGGGGAATTTGAGGATGGCTGTGAACCAATCAAACCGATGAATTGCAGCGACGAATTTGGGTTTGCACAACTCAAAGAAATAAAATTGCCTGACACAACACATACTTGGTTGAACAGAAGCATGAATCTTCAAGAATGCGAGCAAAAGTGCTTGAGGAATTGTTCTTGTGTGGCTTATGCCAATACAAATATCAGTGGCAGCGGCAGTGGCTGTGCCTTATGGATAGGTCATATCATTGATCTGAAAATAATTCCCGGTGCTGGACAGGACCTGTATGTTAAGATGCTGGCATCAGATTTAGTCAAGAATAACACACGTAAAAGATTGAATCCTAAGGTGAAGATTGCTTTGGTTGGGATTGCCTCTGCTGTAATCTTGGTTATTTTCTTCATATGCTTATACATTTTCAAAAGGAGATCAAGCTTCAAAGGCAATTATTTCTCGAACCAGCCTGATGACCAAGAAAAATTAGAAAGTGAAGACTTTGAGCTTCCCTTCTTTGATCTATCCTTGATAAATAGTGCCACTAATAACTTCTCACTTGATAATAAGCTTGGGGAAGGTGGCTTTGGACCGGTATATAAGGGTAAGCTTACAACTGGACAAGATATTGCCGTGAAGAGACTTTCAAAAAGTTCTGGTCAGGGAATGAATGAGTTCAAGAATGAAGTAATTGTGACTGCAAAACTTCAACACCGAAATCTTGTAAAAATTCTTGGTTGCTGCATTCAAGGAGATGAGAAAATGCTAGTTTACGAGTACATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATGAAACACAACGGAGACTATTAAATTGGTCGCAACGGTATCGTATTATCTGTGGGATAGCAAAAGGACTGGCGTATCTTCATCAAGATTCTAGATTGAGAATTATACATAGAGATTTAAAAGCAAGCAACGTATTACTCGATATGGATATGAATCCAAAAATTTCTGACTTCGGCCTTGCTAAAACTTGTGGAGGGGATCAGACCGAAGGAGAGACGATTAGAGTGGTTGGAACCTATGGATATATGGCCCCGGAATATGCTTTTGATGGACAATTCTCAATAAAATCAGATACATTTAGTTATGGCATTTTGTTGTTGGAGATCATCAGTGGAAAACGAAGCAGAGGTTTTCGTCACTCGAACGAGCAAAATCTCATTGGTTATGCATGGCAATTATGGAAGGGGGGAAGTCCGGCTGAGTTGATTGACGACACGATTCATGAAACGTGCAATTTCTCAGAGGTGTTGAGATGTATAAATATCAGTTTGTTGTGCGTTCAACAGCATCCGAATGATCGACCCGAGATGTCGTCGGTAGTTATGATGTTAGGATGTAAAATTCCTTTGTTACAGCCAAAACAACCAGGGTTTTTTGCAGAAAATGAAGGCATGGCAATGGATGGCTACTCAAGTAAAGATAAATCAGCTTCAACCAGTGGGTTGACATTATTTGCCTTCTCAGATACTCAGTAA 2202 40.64 MDVTTGNLTLYSHNSTILVWSARLLRKVPNGVLQLLDNGNLVLRDGDDDQNPQNYSWQSFDYPTDTLLPGMKLGWDLRNNINRRLSAWKNPNDPSPGTFSWEMELHQYPETVMWNGSKEYFRHGPWNGLTITSWPLGLAPNLKLQFVSNQDEVYYEYSVKEESSDTVMLVLNQSIFVRIVYLWSVTDRNWIVYNSLPRDFCDNYALCGPFGYCDFRVVPSCFCLQGFKPVSPKNWKAGEFEDGCEPIKPMNCSDEFGFAQLKEIKLPDTTHTWLNRSMNLQECEQKCLRNCSCVAYANTNISGSGSGCALWIGHIIDLKIIPGAGQDLYVKMLASDLVKNNTRKRLNPKVKIALVGIASAVILVIFFICLYIFKRRSSFKGNYFSNQPDDQEKLESEDFELPFFDLSLINSATNNFSLDNKLGEGGFGPVYKGKLTTGQDIAVKRLSKSSGQGMNEFKNEVIVTAKLQHRNLVKILGCCIQGDEKMLVYEYMPNKSLDFFIFDETQRRLLNWSQRYRIICGIAKGLAYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGETIRVVGTYGYMAPEYAFDGQFSIKSDTFSYGILLLEIISGKRSRGFRHSNEQNLIGYAWQLWKGGSPAELIDDTIHETCNFSEVLRCINISLLCVQQHPNDRPEMSSVVMMLGCKIPLLQPKQPGFFAENEGMAMDGYSSKDKSASTSGLTLFAFSDTQ 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33131398 33135384 - Sed0002166.2 Sed07g1908 720772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1908 733 Gene3D - 1 120 - -
Sed07g1908 733 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 492 694 - -
Sed07g1908 733 Gene3D Phosphorylase Kinase; domain 1 390 491 - -
Sed07g1908 733 SUPERFAMILY Protein kinase-like (PK-like) 399 686 IPR011009 -
Sed07g1908 733 CDD STKc_IRAK 422 686 - -
Sed07g1908 733 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1908 733 Pfam S-locus glycoprotein domain 121 230 IPR000858 GO:0048544(InterPro)
Sed07g1908 733 SUPERFAMILY alpha-D-mannose-specific plant lectins 5 94 IPR036426 -
Sed07g1908 733 ProSiteProfiles Protein kinase domain profile. 416 693 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1908 733 PIRSF SRK 2 731 IPR024171 GO:0004674(InterPro)
Sed07g1908 733 ProSiteProfiles PAN/Apple domain profile. 252 333 IPR003609 -
Sed07g1908 733 SMART serkin_6 416 693 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1908 733 CDD PAN_AP_plant 249 331 - -
Sed07g1908 733 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 700 - -
Sed07g1908 733 SMART ntp_6 253 332 IPR003609 -
Sed07g1908 733 ProSiteProfiles Bulb-type lectin domain profile. 1 56 IPR001480 -
Sed07g1908 733 Pfam PAN-like domain 252 318 IPR003609 -
Sed07g1908 733 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 381 491 - -
Sed07g1908 733 Gene3D Transferase(Phosphotransferase) domain 1 492 691 - -
Sed07g1908 733 Pfam D-mannose binding lectin 4 89 IPR001480 -
Sed07g1908 733 Pfam Protein tyrosine and serine/threonine kinase 417 685 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1908 Sed-Chr7:33131398 Sed07g1910 Sed-Chr7:33131398 0.00E+00 dispersed
Sed07g1907 Sed-Chr7:33131398 Sed07g1908 Sed-Chr7:33131398 0.00E+00 tandem
Sed07g1908 Sed-Chr7:33131398 Sed07g1909 Sed-Chr7:33131398 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79532 PF07714 PK_Tyr_Ser-Thr 2.10E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1908 - - - 0.0