Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1909 ATGGACTCTGTCTCCCAAACACTAATCGCTTTTAGCTTAGCTTTTTGTGTCTTCAGCTCTGTAGCTTCCATTGATTCCTTAACCGCTCGAAACCCATTTGTGAGCGACGGCAGCAGCTTAGTCTCCTCCAATGGAAACTTCGAATTGGGTTTCTTCAGTCCTCATGGTCCTGGCGGGCGTTACTTGGGAATCTGGTTCAAGAATCGACGAGGCCCGACCTCTGTTTGGGTTGCCAACAGAGAGAACTCCATTAATGACACCTCTGGGGTACTGGCCATGGATGTTACAACAGGAAATCTTACACTCTACAGCCACAACAGCACCATCCTTGTTTGGTCTGCAAGGTTACTGAGAAAAGTCCCCAATGGGGTTTTGCAGCTATTGGACAATGGAAATCTTGTTCTGAGAGATGGGGATGATGATCAAAATCCTCAAAACTACTCATGGCAAAGCTTTGATTACCCAACCGACACTCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAACAACATTAACAGAAGATTGTCTGCTTGGAAAAATCCCAATGACCCATCTCCTGGAACCTTCAGTTGGGAGATGGAGCTTCATCAGTATCCTGAGACAGTGATGTGGAATGGTTCCAAAGAATACTTTAGGCATGGCCCTTGGAATGGCCTCACAATCACTAGTTGGCCTCTAGGCTTAGCCCCAAACTTGAAACTCCAATTTGTTTCCAATCAGGATGAGGTTTACTACGAATACTCCGTAAAAGAGGAGTCTTCTGATACAGTGATGCTGGTGTTGAACCAGTCCATTTTCGTCCGGATCGTCTACTTATGGTCTGTAACCGATAGAAACTGGATAGTCTACAATTCATTACCAAGAGATTTCTGTGACAATTATGCTTTGTGTGGTCCCTTTGGATATTGTGATTTTAGAGTAGTTCCATCTTGTTTTTGTCTACAAGGGTTTAAGCCAGTATCACCCAAGAATTGGAAAGCAGGGGAATTTGAGGATGGCTGTGAACCAATCAAACCGATGAATTGCAGCGACGAATTTGGGTTTGCACAACTCAAAGAAATAAAATTGCCTGACACAACACATACTTGGTTGAACAGAAGCATGAATCTTCAAGAATGCGAGCAAAAGTGCTTGAGGAATTGTTCTTGTGTGGCTTATGCCAATACAAATATCAGTGGCAGCGGCAGTGGCTGTGCCTTATGGATAGGTCATATCATTGATCTGAAAATAATTCCCGGTGCTGGACAGGACCTGTATGTTAAGATGCTGGCATCAGATTTAGTCAAGAATAACACACGTAAAAGATTGAATCCTAAGGTGAAGATTGCTTTGGTTGGGATTGCCTCTGCTGTAATCTTGGTTATTTTCTTCATATGCTTATACATTTTCAAAAGGAGATCAAGCTTCAAAGGCAATTATTTCTCGAACCAGCCTGATGACCAAGAAAAATTAGAAAGTGAAGACTTTGAGCTTCCCTTCTTTGATCTATCCTTGATAAATAGTGCCACTAATAACTTCTCACTTGATAATAAGCTTGGGGAAGGTGGCTTTGGACCGGTATATAAGGGTAAGCTTACAACTGGACAAGATATTGCCGTGAAGAGACTTTCAAAAAGTTCTGGTCAGGGAATGAATGAGTTCAAGAATGAAGTAATTGTGACTGCAAAACTTCAACACCGAAATCTTGTAAAAATTCTTGGTTGCTGCATTCAAGGAGATGAGAAAATGCTAGTTTACGAGTACATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATGAAACACAACGGAGACTATTAAATTGGTCGCAACGGTATCGTATTATCTGTGGGATAGCAAAAGGACTGGCGTATCTTCATCAAGATTCTAGATTGAGAATTATACATAGAGATTTAAAAGCAAGCAACGTATTACTCGATATGGATATGAATCCAAAAATTTCTGACTTCGGCCTTGCTAAAACTTGTGGAGGGGATCAGACCGAAGGAGAGACGATTAGAGTGGTTGGAACCTATGGATATATGGCCCCGGAATATGCTTTTGATGGACAATTCTCAATAAAATCAGATACATTTAGTTATGGCATTTTGTTGTTGGAGATCATCAGTGGAAAACGAAGCAGAGGTTTTCGTCACTCGAACGAGCAAAATCTCATTGGTTATGCATGGCAATTATGGAAGGGGGGAAGTCCGGCTGAGTTGATTGACGACACGATTCATGAAACGTGCAATTTCTCAGAGGTGTTGAGATGTATAAATATCAGTTTGTTGTGCGTTCAACAGCATCCGAATGATCGACCCGAGATGTCGTCGGTAGTTATGATGTTAGGATGTAAAATTCCTTTGTTACAGCCAAAACAACCAGGGTTTTTTGCAGAAAATGAAGGCATGGCAATGGATGGCTACTCAAGTAAAGATAAATCAGCTTCAACCAGTGGGTTGACATTATTTGCCTTCTCAGATACTCAGTAA 2478 41.65 MDSVSQTLIAFSLAFCVFSSVASIDSLTARNPFVSDGSSLVSSNGNFELGFFSPHGPGGRYLGIWFKNRRGPTSVWVANRENSINDTSGVLAMDVTTGNLTLYSHNSTILVWSARLLRKVPNGVLQLLDNGNLVLRDGDDDQNPQNYSWQSFDYPTDTLLPGMKLGWDLRNNINRRLSAWKNPNDPSPGTFSWEMELHQYPETVMWNGSKEYFRHGPWNGLTITSWPLGLAPNLKLQFVSNQDEVYYEYSVKEESSDTVMLVLNQSIFVRIVYLWSVTDRNWIVYNSLPRDFCDNYALCGPFGYCDFRVVPSCFCLQGFKPVSPKNWKAGEFEDGCEPIKPMNCSDEFGFAQLKEIKLPDTTHTWLNRSMNLQECEQKCLRNCSCVAYANTNISGSGSGCALWIGHIIDLKIIPGAGQDLYVKMLASDLVKNNTRKRLNPKVKIALVGIASAVILVIFFICLYIFKRRSSFKGNYFSNQPDDQEKLESEDFELPFFDLSLINSATNNFSLDNKLGEGGFGPVYKGKLTTGQDIAVKRLSKSSGQGMNEFKNEVIVTAKLQHRNLVKILGCCIQGDEKMLVYEYMPNKSLDFFIFDETQRRLLNWSQRYRIICGIAKGLAYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGETIRVVGTYGYMAPEYAFDGQFSIKSDTFSYGILLLEIISGKRSRGFRHSNEQNLIGYAWQLWKGGSPAELIDDTIHETCNFSEVLRCINISLLCVQQHPNDRPEMSSVVMMLGCKIPLLQPKQPGFFAENEGMAMDGYSSKDKSASTSGLTLFAFSDTQ 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33131398 33135384 - Sed0002166.3 Sed07g1909 720773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1909 825 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Sed07g1909 825 CDD PAN_AP_plant 341 423 - -
Sed07g1909 825 Gene3D - 21 152 IPR036426 -
Sed07g1909 825 PIRSF SRK 1 823 IPR024171 GO:0004674(InterPro)
Sed07g1909 825 ProSiteProfiles PAN/Apple domain profile. 344 425 IPR003609 -
Sed07g1909 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 186 IPR036426 -
Sed07g1909 825 Pfam PAN-like domain 344 410 IPR003609 -
Sed07g1909 825 Gene3D Transferase(Phosphotransferase) domain 1 584 783 - -
Sed07g1909 825 Gene3D Phosphorylase Kinase; domain 1 482 583 - -
Sed07g1909 825 CDD STKc_IRAK 514 778 - -
Sed07g1909 825 SUPERFAMILY Protein kinase-like (PK-like) 491 778 IPR011009 -
Sed07g1909 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 583 - -
Sed07g1909 825 Pfam S-locus glycoprotein domain 213 322 IPR000858 GO:0048544(InterPro)
Sed07g1909 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1909 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 584 786 - -
Sed07g1909 825 SMART ntp_6 345 424 IPR003609 -
Sed07g1909 825 Pfam D-mannose binding lectin 73 181 IPR001480 -
Sed07g1909 825 Pfam Protein tyrosine and serine/threonine kinase 509 777 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1909 825 CDD B_lectin 34 155 IPR001480 -
Sed07g1909 825 ProSiteProfiles Protein kinase domain profile. 508 785 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1909 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 24 792 - -
Sed07g1909 825 SMART serkin_6 508 785 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1909 825 SMART blect_4 31 155 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3133 Sed-Chr4:42137069 Sed07g1909 Sed-Chr7:33131398 2.90E-153 dispersed
Sed04g3135 Sed-Chr4:42146214 Sed07g1909 Sed-Chr7:33131398 9.90E-255 dispersed
Sed07g1907 Sed-Chr7:33131398 Sed07g1909 Sed-Chr7:33131398 0.00E+00 dispersed
Sed07g1909 Sed-Chr7:33131398 Sed07g1911 Sed-Chr7:33131398 0.00E+00 dispersed
Sed07g1908 Sed-Chr7:33131398 Sed07g1909 Sed-Chr7:33131398 0.00E+00 tandem
Sed07g1909 Sed-Chr7:33131398 Sed07g1910 Sed-Chr7:33131398 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79533 PF07714 PK_Tyr_Ser-Thr 2.70E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1909 - - - 0.0