Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1920 | ATGAATTGCTTTCAATGTTGCATGTCAAAGGAGAAAGTCAATAGGAAGTCTTTGAAAAAGAGCATTAAGGAGTATCATGATACCAAGACCTTAGCCTCATTTGCCAATATTTCCTTTAAATCTGATGGCAGTAGACAAAAGTACATAACTGGGGAGATAAAGAAGTTAGGAAAAGGAAATATGTCTATTCAAATTTTTACAGTTAGTGAGCTAAGTACTGCTACAAATAACTTCAACCACGAAAATCTGTTGGGAGAAGGTGGTTTTGGAAGGGTTTACAAAGGCATCATTGAAAGCACAAAACAAGTAACGGCCGTGAAACAACTTGACCGAAACGGGCTTCAGGGAAACAGAGAATTCCTTGTTGAGGTTTTGATGTTGAGCCTTCTTCACCATCCCAATCTTGTGAATTTGGTTGGGTATTGTGCTGATGGGGATCAAAGGATTTTAGTTTATGAGTGCATGGCTAAAGGTTCCTTAGAGGATCATCTTCTCGATATAATGCCCGATAAGACGCCTTTGGACTGGAAAACAAGGATGAAAATTGCAGAAGGAGCAGCAAAAGGACTCGAATACTTGCACGAAACTGTGGATCCTCCTGTTATATATCGCGATTTCAAAGCTTCAAACATATTGCTGGATGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTAGCTAAGTTGGGTCCTACCGGGGATAAATCTCATGTTTCCACTAGAGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCACTTACAGGACAGTTGACGACGAAATCGGATGTCTACAGTTTCGGTGTCGTGTTTCTGGAAATAATAACAGGACGAAGAGTTATAGACAATGCAAGACCAACAGCAGAACAGAATTTAATTACTTGGGCACAGCCACTTTTGAAAGACAGGAGGAAATTTACAGTAATGGCAGATCCAAAGCTGGAAGGAAATTACCCAGTGAAGGCTCTGTATCAAGCTCTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCGAGCACACGGCCATTGATCAGCGACGTTGTTACGGCTCTTGAATATTTAGCCGCAAACAAGGATATGGATGTAGACACAGATGACGAATCAGATTCAGGATCGGGATCGGATTCCGTTTCTCCTGATAGAAGTAGTAATAATGGAGGTAAAATTGTTGATGTTGAGAGTGATGGGAGGTAA | 1197 | 41.35 | MNCFQCCMSKEKVNRKSLKKSIKEYHDTKTLASFANISFKSDGSRQKYITGEIKKLGKGNMSIQIFTVSELSTATNNFNHENLLGEGGFGRVYKGIIESTKQVTAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYECMAKGSLEDHLLDIMPDKTPLDWKTRMKIAEGAAKGLEYLHETVDPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLLKDRRKFTVMADPKLEGNYPVKALYQALAVAAMCLQEEASTRPLISDVVTALEYLAANKDMDVDTDDESDSGSGSDSVSPDRSSNNGGKIVDVESDGR | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 33349097 | 33351568 | - | Sed0018832.1 | Sed07g1920 | 720784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1920 | 398 | MobiDBLite | consensus disorder prediction | 360 | 398 | - | - | |
Sed07g1920 | 398 | Pfam | Protein kinase domain | 79 | 349 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g1920 | 398 | CDD | STKc_IRAK | 84 | 353 | - | - | |
Sed07g1920 | 398 | SUPERFAMILY | Protein kinase-like (PK-like) | 63 | 361 | IPR011009 | - | |
Sed07g1920 | 398 | Gene3D | Transferase(Phosphotransferase) domain 1 | 155 | 376 | - | - | |
Sed07g1920 | 398 | FunFam | Serine/threonine-protein kinase PBS1 | 155 | 370 | - | - | |
Sed07g1920 | 398 | ProSiteProfiles | Protein kinase domain profile. | 78 | 355 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g1920 | 398 | Gene3D | Phosphorylase Kinase; domain 1 | 62 | 154 | - | - | |
Sed07g1920 | 398 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 201 | 213 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed07g1920 | 398 | MobiDBLite | consensus disorder prediction | 372 | 390 | - | - | |
Sed07g1920 | 398 | PANTHER | OS07G0668900 PROTEIN | 30 | 367 | - | - | |
Sed07g1920 | 398 | ProSitePatterns | Protein kinases ATP-binding region signature. | 84 | 107 | IPR017441 | GO:0005524(InterPro) | |
Sed07g1920 | 398 | FunFam | probable serine/threonine-protein kinase RLCKVII | 50 | 154 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1912 | Sed-Chr5:32475863 | Sed07g1920 | Sed-Chr7:33349097 | 5.80E-74 | dispersed | |
Sed07g1920 | Sed-Chr7:33349097 | Sed13g1171 | Sed-Chr13:15483185 | 1.20E-194 | dispersed | |
Sed07g1920 | Sed-Chr7:33349097 | Sed07g2881 | Sed-Chr7:43496072 | 7.20E-163 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79538 | PF00069 | Pkinase | 2.30E-46 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1920 | - | - | - | 0.0 |