Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1920 ATGAATTGCTTTCAATGTTGCATGTCAAAGGAGAAAGTCAATAGGAAGTCTTTGAAAAAGAGCATTAAGGAGTATCATGATACCAAGACCTTAGCCTCATTTGCCAATATTTCCTTTAAATCTGATGGCAGTAGACAAAAGTACATAACTGGGGAGATAAAGAAGTTAGGAAAAGGAAATATGTCTATTCAAATTTTTACAGTTAGTGAGCTAAGTACTGCTACAAATAACTTCAACCACGAAAATCTGTTGGGAGAAGGTGGTTTTGGAAGGGTTTACAAAGGCATCATTGAAAGCACAAAACAAGTAACGGCCGTGAAACAACTTGACCGAAACGGGCTTCAGGGAAACAGAGAATTCCTTGTTGAGGTTTTGATGTTGAGCCTTCTTCACCATCCCAATCTTGTGAATTTGGTTGGGTATTGTGCTGATGGGGATCAAAGGATTTTAGTTTATGAGTGCATGGCTAAAGGTTCCTTAGAGGATCATCTTCTCGATATAATGCCCGATAAGACGCCTTTGGACTGGAAAACAAGGATGAAAATTGCAGAAGGAGCAGCAAAAGGACTCGAATACTTGCACGAAACTGTGGATCCTCCTGTTATATATCGCGATTTCAAAGCTTCAAACATATTGCTGGATGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTAGCTAAGTTGGGTCCTACCGGGGATAAATCTCATGTTTCCACTAGAGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCACTTACAGGACAGTTGACGACGAAATCGGATGTCTACAGTTTCGGTGTCGTGTTTCTGGAAATAATAACAGGACGAAGAGTTATAGACAATGCAAGACCAACAGCAGAACAGAATTTAATTACTTGGGCACAGCCACTTTTGAAAGACAGGAGGAAATTTACAGTAATGGCAGATCCAAAGCTGGAAGGAAATTACCCAGTGAAGGCTCTGTATCAAGCTCTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCGAGCACACGGCCATTGATCAGCGACGTTGTTACGGCTCTTGAATATTTAGCCGCAAACAAGGATATGGATGTAGACACAGATGACGAATCAGATTCAGGATCGGGATCGGATTCCGTTTCTCCTGATAGAAGTAGTAATAATGGAGGTAAAATTGTTGATGTTGAGAGTGATGGGAGGTAA 1197 41.35 MNCFQCCMSKEKVNRKSLKKSIKEYHDTKTLASFANISFKSDGSRQKYITGEIKKLGKGNMSIQIFTVSELSTATNNFNHENLLGEGGFGRVYKGIIESTKQVTAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYECMAKGSLEDHLLDIMPDKTPLDWKTRMKIAEGAAKGLEYLHETVDPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLLKDRRKFTVMADPKLEGNYPVKALYQALAVAAMCLQEEASTRPLISDVVTALEYLAANKDMDVDTDDESDSGSGSDSVSPDRSSNNGGKIVDVESDGR 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33349097 33351568 - Sed0018832.1 Sed07g1920 720784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1920 398 MobiDBLite consensus disorder prediction 360 398 - -
Sed07g1920 398 Pfam Protein kinase domain 79 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1920 398 CDD STKc_IRAK 84 353 - -
Sed07g1920 398 SUPERFAMILY Protein kinase-like (PK-like) 63 361 IPR011009 -
Sed07g1920 398 Gene3D Transferase(Phosphotransferase) domain 1 155 376 - -
Sed07g1920 398 FunFam Serine/threonine-protein kinase PBS1 155 370 - -
Sed07g1920 398 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1920 398 Gene3D Phosphorylase Kinase; domain 1 62 154 - -
Sed07g1920 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1920 398 MobiDBLite consensus disorder prediction 372 390 - -
Sed07g1920 398 PANTHER OS07G0668900 PROTEIN 30 367 - -
Sed07g1920 398 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524(InterPro)
Sed07g1920 398 FunFam probable serine/threonine-protein kinase RLCKVII 50 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1912 Sed-Chr5:32475863 Sed07g1920 Sed-Chr7:33349097 5.80E-74 dispersed
Sed07g1920 Sed-Chr7:33349097 Sed13g1171 Sed-Chr13:15483185 1.20E-194 dispersed
Sed07g1920 Sed-Chr7:33349097 Sed07g2881 Sed-Chr7:43496072 7.20E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79538 PF00069 Pkinase 2.30E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1920 - - - 0.0