Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1925 ATGGCTAAGAAGAGCAGTTTTGGAGTTTGTTCCCAAAACAAAGCATGTGTCATTTTTGGGGTAATGGTGCTGTTGGTGCAAAGTGTTTTTGGATATGAGTTTCAAGTGGGAGGTTCAAAGGGTGCTTGGGCTGTTTCTTCTGATCCTAATGCTCAGAGTTTAAATCAATGGGCTCAATCTCGTCGATTTCAAATTGGTGACTCCTTAGTGTTCAGTTACCAAGGTGGGCAAGACTCAGTGCTGATGGTGAACCTAGATGACTATAATAACTGCTACACTGAATCACCCATAAAGCACTTCTCAGATGGCCACACCATCATCAAGTTTGAAAAATCTGGTCCTCACTACTTCATAAGTGGTATCAAAGACAATTGCCTCAAGAATGAAAAACTGGTGGTTGTTGTCTTGGCTGATAGAACGAAGCAAAACTCTTCTCCACCCCTAGCTCCAGTCGAGGAACCGCAATCTCCACCCCCCGAAGCTTCGGCCCAAATGAACCCATCTCCGTCCCCGATTGCCGAGGAGCCACCTGCTAATGCGGCATCCTCTTCTACCTCTATCATCAGCTTCTTCCTGGGGATAACTGGAGTGTTTGCTACTTCAGCTGTTCTTTTGTAA 618 45.47 MAKKSSFGVCSQNKACVIFGVMVLLVQSVFGYEFQVGGSKGAWAVSSDPNAQSLNQWAQSRRFQIGDSLVFSYQGGQDSVLMVNLDDYNNCYTESPIKHFSDGHTIIKFEKSGPHYFISGIKDNCLKNEKLVVVVLADRTKQNSSPPLAPVEEPQSPPPEASAQMNPSPSPIAEEPPANAASSSTSIISFFLGITGVFATSAVLL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33537634 33539947 - Sed0008825.1 Sed07g1925 720789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1925 205 Pfam Plastocyanin-like domain 48 127 IPR003245 GO:0009055(InterPro)
Sed07g1925 205 ProSiteProfiles Phytocyanin domain profile. 32 137 IPR003245 GO:0009055(InterPro)
Sed07g1925 205 FunFam Early nodulin-like protein 1 31 140 - -
Sed07g1925 205 PANTHER BLUE COPPER PROTEIN 25 158 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Sed07g1925 205 SUPERFAMILY Cupredoxins 31 136 IPR008972 -
Sed07g1925 205 MobiDBLite consensus disorder prediction 142 180 - -
Sed07g1925 205 CDD OsENODL1_like 32 136 IPR041846 -
Sed07g1925 205 Gene3D - 32 148 IPR008972 -
Sed07g1925 205 MobiDBLite consensus disorder prediction 150 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1925 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3189 Sed-Chr4:42585570 Sed07g1925 Sed-Chr7:33537634 1.90E-36 dispersed
Sed07g1925 Sed-Chr7:33537634 Sed11g1139 Sed-Chr11:27170074 1.30E-27 dispersed
Sed07g1925 Sed-Chr7:33537634 Sed08g2159 Sed-Chr8:35527636 2.10E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g460 . . Bda07g00343 . . . . . Cmo16g00907 Cmo04g01014 Cma01g01146 . . . Sed04g3189 . . Bhi09g01933 Tan01g4518 Cmetu04g2832 . Hepe01g1302 Mch11g1162 . Cla10g00524 Cam10g0519 Cec10g0536 Cco10g0526 Clacu10g0541 Cmu10g1367 Cre10g0769 . . . . Lsi04g01232 Csa03g00531 Chy04g00987 Cme06g02276 . . . . . . . . Sed07g1925 Cmo01g01199 . Cma04g00944 Cma16g00852 Car04g00882 Car16g00852 . . Bhi11g00646 Tan01g1683 Cmetu06g0869 . . Mch10g1234 . Cla05g01522 Cam05g1635 Cec05g1638 Cco05g1671 Clacu05g1624 Cmu05g1522 . Lsi05g00619 . Chy06g01800 Cme04g00836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003173 1 2 0 0 0 2 3 2 2 2 2 2 3 2 2 2 2 0 0 2 2 2 2 2 2 3 2 2 2 1 51