Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1933 ATGGCGTCTTCAAGGTCCCCAAACGAATCCTCCGATGATATCGTCGACACCACCACCCCCTTGATGGGGAATCCGAGCCGGTCGCTGGACGATGCGCATTCAGGTCGCCGATTCGTGCAGAGGCAGAGCCTGCGTCAGGCGGCCAGGTTTTTGAGGCAGGCGAGTAGTCGGAGGACGATGCGTGAGCCATCTATGTTGGTCCGAGAGACGGCTGCCGAGCAGTTGGAGGAGCGGCAGAGTGATTGGGCCTATTCCAAGCCCGTTGTGATCCTCGACATCGTGTGGAATTTCGCTTTCGTCCTTGTTGCTGCTACCATTTTGGTTATGAGCCACAATGAATCTCCTTCTATGCCTTTGAGGCTGTGGATTGTGGGGTATGCCTTTCAATGCCTTCTCCATATGGTCTGTGTTTGTGTTGAGTATCGCCGGCGCAGGCATCGATATTCGGCCATCAATTCGATGGATGAGGGAAATTCTGGGCGCGGCTTTTCAGGTCTCGGCTCCAGTGCAAACTCGAGCCATTATTTATCTCTGGCACAATTGGACGATAACAATACCAGTGTAGCAAAGCACCTTGAATCTGCAAATACAATGTTTTCCTTCATCTGGTGGATTATTGGATTCTACTGGGTATCTGCCGGAGGCCAATCTTTAGCACACGATTCCCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGACGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGTTGCTGTCTTCCATGTATCATTGCAATTTTATATGCCGTAGCAGACCAGGAAGGAGCAACCAAAGAAGATGTTGAACAATTGTCAAAATTTAAATACAAAAAGAGTAACGATGCCGAGAAAATCTCTGCTGATGTACAGGAGCCTCTTGGTGGGATAATGACCGAGTGTGGGACAGATTCACCCATTGAACGTACTCTCTCGCATGAGGATGCCGAGTGCTGCATTTGCCTTTGTGCATATGATGATGGTGTCGAGCTACGAGAACTCCCATGTGGTCACCACTACCACTGTGTCTGCGTCGATAAGTGGTTGTACATTAATGCTATTTGTCCTCTCTGCAAGTACAACATCTTGAAAAATAGTAATCTTGGTCAAGAGGAAGCTTAA 1152 48.0 MASSRSPNESSDDIVDTTTPLMGNPSRSLDDAHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVLVAATILVMSHNESPSMPLRLWIVGYAFQCLLHMVCVCVEYRRRRHRYSAINSMDEGNSGRGFSGLGSSANSSHYLSLAQLDDNNTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGATKEDVEQLSKFKYKKSNDAEKISADVQEPLGGIMTECGTDSPIERTLSHEDAECCICLCAYDDGVELRELPCGHHYHCVCVDKWLYINAICPLCKYNILKNSNLGQEEA 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33785291 33807816 + Sed0021492.1 Sed07g1933 720797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1933 383 FunFam E3 ubiquitin-protein ligase At1g12760 314 379 - -
Sed07g1933 383 SMART ring_2 328 368 IPR001841 -
Sed07g1933 383 PANTHER TARGET OF ERK KINASE MPK-1 43 373 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Sed07g1933 383 MobiDBLite consensus disorder prediction 1 34 - -
Sed07g1933 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 381 IPR013083 -
Sed07g1933 383 MobiDBLite consensus disorder prediction 1 25 - -
Sed07g1933 383 SUPERFAMILY RING/U-box 319 375 - -
Sed07g1933 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Sed07g1933 383 Pfam Ring finger domain 327 369 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1933 Sed-Chr7:33785291 Sed12g0197 Sed-Chr12:1104885 2.60E-109 dispersed
Sed07g1933 Sed-Chr7:33785291 Sed02g1598 Sed-Chr2:51517566 8.00E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1933 - - - 0.0