Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1935 ATGGGAAGGGTAAAGCTGAAGATCAAGAGGCTGGACAACACCAACGGCCGCCAAGCAACCTTCGCCAAGAGAAAGCACGGCATCATGAAGAAGGCCAATGAGCTCTCCATCCTGTGCGACATTGATATCATTCTCCTCATGTTTTCGCCCTCTGGAAAGCCCTCCCTCTGCTCCGGAAAACGCAGCATTGAAGAAGTCATCGCTAAGTTTGCTCAACAGACTCCCCAGGAACGAGCCAAAAAGAAATTGGACAGCCTTGAAACATTAAGGAAAACTTTTGAGAAATTGGACCATGATGTCAACATACAAGATTTTCTTGGAACAAGTAGCCAAACCATCGAGGATTTGGCTGCTCAAGCAAAGTTATTACGGACCCAACTTTCTGAAGTACATCAGAGACTAAGCTATTGGGGTAATGCTGATAAGATAAACAACGTGGATCATTTGACCCAAATGGAGGATTCGTTGAGAGATTCACTTCAACAAGTTCAAGCCCACAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCCCTAATCAGATGCAGGATGGTATGCTACCTTTCGATTTGAGTGTTGAACAACAGCTCCAACAGCTCCAACAACTCCAACACTTATCTTGGATTCCCAGTGATAATCAAAATATGGTTTTACACGATGATCCGAACTTCGTTCCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTCGCTAGTTACCCCGGTTATTTCGGCACGGGTAGAAGTCCGGAGATTTCTAATTCTGGACAAGAAAATGGCGTCCTCCCCGAACTAAGCAAAACAGAACCTCTAAGGCCCCAGCAAGGAGGCCAAAATTCCTACATGTCTTATAATGTCAATTATTTTAATGACCCCAGATATCTACCAGCAGCAGAGATGAACCTGCCAGTAAATCCTGTAGATTATAATGTTAATGAGAACAACTACGACGACGCCACGCAACTCAATTGGGCTTCTTCTTCGGGCCCCTTTGCAATGTTAGAAGACAATCCCTTATTTCCACAATTATAG 1041 44.67 MGRVKLKIKRLDNTNGRQATFAKRKHGIMKKANELSILCDIDIILLMFSPSGKPSLCSGKRSIEEVIAKFAQQTPQERAKKKLDSLETLRKTFEKLDHDVNIQDFLGTSSQTIEDLAAQAKLLRTQLSEVHQRLSYWGNADKINNVDHLTQMEDSLRDSLQQVQAHKENLQKHPPVPLEFPNQMQDGMLPFDLSVEQQLQQLQQLQHLSWIPSDNQNMVLHDDPNFVPHRDVECSASSSFASYPGYFGTGRSPEISNSGQENGVLPELSKTEPLRPQQGGQNSYMSYNVNYFNDPRYLPAAEMNLPVNPVDYNVNENNYDDATQLNWASSSGPFAMLEDNPLFPQL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33886834 33890912 + Sed0013054.1 Sed07g1935 720799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1935 346 Coils Coil 149 173 - -
Sed07g1935 346 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Sed07g1935 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 Coils Coil 76 96 - -
Sed07g1935 346 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Sed07g1935 346 Gene3D - 13 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 255 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed07g1935 346 Coils Coil 113 133 - -
Sed07g1935 346 MobiDBLite consensus disorder prediction 252 282 - -
Sed07g1935 346 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1935 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2340 Sed-Chr1:17653766 Sed07g1935 Sed-Chr7:33886834 1.60E-65 dispersed
Sed07g1935 Sed-Chr7:33886834 Sed13g0960 Sed-Chr13:7365479 1.00E-24 dispersed
Sed07g1935 Sed-Chr7:33886834 Sed07g1936 Sed-Chr7:33886834 1.00E-149 tandem
Sed06g1309 Sed-Chr6:37358467 Sed07g1935 Sed-Chr7:33886834 4.10E-06 transposed
Sed06g1516 Sed-Chr6:39839151 Sed07g1935 Sed-Chr7:33886834 1.50E-145 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39139 PF00319 SRF-TF 2.80E-18 No_clan Sed TF