Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1935 | ATGGGAAGGGTAAAGCTGAAGATCAAGAGGCTGGACAACACCAACGGCCGCCAAGCAACCTTCGCCAAGAGAAAGCACGGCATCATGAAGAAGGCCAATGAGCTCTCCATCCTGTGCGACATTGATATCATTCTCCTCATGTTTTCGCCCTCTGGAAAGCCCTCCCTCTGCTCCGGAAAACGCAGCATTGAAGAAGTCATCGCTAAGTTTGCTCAACAGACTCCCCAGGAACGAGCCAAAAAGAAATTGGACAGCCTTGAAACATTAAGGAAAACTTTTGAGAAATTGGACCATGATGTCAACATACAAGATTTTCTTGGAACAAGTAGCCAAACCATCGAGGATTTGGCTGCTCAAGCAAAGTTATTACGGACCCAACTTTCTGAAGTACATCAGAGACTAAGCTATTGGGGTAATGCTGATAAGATAAACAACGTGGATCATTTGACCCAAATGGAGGATTCGTTGAGAGATTCACTTCAACAAGTTCAAGCCCACAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCCCTAATCAGATGCAGGATGGTATGCTACCTTTCGATTTGAGTGTTGAACAACAGCTCCAACAGCTCCAACAACTCCAACACTTATCTTGGATTCCCAGTGATAATCAAAATATGGTTTTACACGATGATCCGAACTTCGTTCCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTCGCTAGTTACCCCGGTTATTTCGGCACGGGTAGAAGTCCGGAGATTTCTAATTCTGGACAAGAAAATGGCGTCCTCCCCGAACTAAGCAAAACAGAACCTCTAAGGCCCCAGCAAGGAGGCCAAAATTCCTACATGTCTTATAATGTCAATTATTTTAATGACCCCAGATATCTACCAGCAGCAGAGATGAACCTGCCAGTAAATCCTGTAGATTATAATGTTAATGAGAACAACTACGACGACGCCACGCAACTCAATTGGGCTTCTTCTTCGGGCCCCTTTGCAATGTTAGAAGACAATCCCTTATTTCCACAATTATAG | 1041 | 44.67 | MGRVKLKIKRLDNTNGRQATFAKRKHGIMKKANELSILCDIDIILLMFSPSGKPSLCSGKRSIEEVIAKFAQQTPQERAKKKLDSLETLRKTFEKLDHDVNIQDFLGTSSQTIEDLAAQAKLLRTQLSEVHQRLSYWGNADKINNVDHLTQMEDSLRDSLQQVQAHKENLQKHPPVPLEFPNQMQDGMLPFDLSVEQQLQQLQQLQHLSWIPSDNQNMVLHDDPNFVPHRDVECSASSSFASYPGYFGTGRSPEISNSGQENGVLPELSKTEPLRPQQGGQNSYMSYNVNYFNDPRYLPAAEMNLPVNPVDYNVNENNYDDATQLNWASSSGPFAMLEDNPLFPQL | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 33886834 | 33890912 | + | Sed0013054.1 | Sed07g1935 | 720799 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1935 | 346 | Coils | Coil | 149 | 173 | - | - | |
Sed07g1935 | 346 | SUPERFAMILY | SRF-like | 2 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed07g1935 | 346 | CDD | MADS_SRF_like | 2 | 84 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
Sed07g1935 | 346 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 54 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed07g1935 | 346 | ProSiteProfiles | MADS-box domain profile. | 1 | 53 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed07g1935 | 346 | Coils | Coil | 76 | 96 | - | - | |
Sed07g1935 | 346 | FunFam | Agamous-like MADS-box protein AGL30 | 14 | 95 | - | - | |
Sed07g1935 | 346 | Gene3D | - | 13 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed07g1935 | 346 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed07g1935 | 346 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 255 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed07g1935 | 346 | Coils | Coil | 113 | 133 | - | - | |
Sed07g1935 | 346 | MobiDBLite | consensus disorder prediction | 252 | 282 | - | - | |
Sed07g1935 | 346 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed07g1935 | 346 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed07g1935 | 346 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2340 | Sed-Chr1:17653766 | Sed07g1935 | Sed-Chr7:33886834 | 1.60E-65 | dispersed | |
Sed07g1935 | Sed-Chr7:33886834 | Sed13g0960 | Sed-Chr13:7365479 | 1.00E-24 | dispersed | |
Sed07g1935 | Sed-Chr7:33886834 | Sed07g1936 | Sed-Chr7:33886834 | 1.00E-149 | tandem | |
Sed06g1309 | Sed-Chr6:37358467 | Sed07g1935 | Sed-Chr7:33886834 | 4.10E-06 | transposed | |
Sed06g1516 | Sed-Chr6:39839151 | Sed07g1935 | Sed-Chr7:33886834 | 1.50E-145 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39139 | PF00319 | SRF-TF | 2.80E-18 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1935 | - | - | - | 0.0 |