Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1935 ATGGGAAGGGTAAAGCTGAAGATCAAGAGGCTGGACAACACCAACGGCCGCCAAGCAACCTTCGCCAAGAGAAAGCACGGCATCATGAAGAAGGCCAATGAGCTCTCCATCCTGTGCGACATTGATATCATTCTCCTCATGTTTTCGCCCTCTGGAAAGCCCTCCCTCTGCTCCGGAAAACGCAGCATTGAAGAAGTCATCGCTAAGTTTGCTCAACAGACTCCCCAGGAACGAGCCAAAAAGAAATTGGACAGCCTTGAAACATTAAGGAAAACTTTTGAGAAATTGGACCATGATGTCAACATACAAGATTTTCTTGGAACAAGTAGCCAAACCATCGAGGATTTGGCTGCTCAAGCAAAGTTATTACGGACCCAACTTTCTGAAGTACATCAGAGACTAAGCTATTGGGGTAATGCTGATAAGATAAACAACGTGGATCATTTGACCCAAATGGAGGATTCGTTGAGAGATTCACTTCAACAAGTTCAAGCCCACAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCCCTAATCAGATGCAGGATGGTATGCTACCTTTCGATTTGAGTGTTGAACAACAGCTCCAACAGCTCCAACAACTCCAACACTTATCTTGGATTCCCAGTGATAATCAAAATATGGTTTTACACGATGATCCGAACTTCGTTCCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTCGCTAGTTACCCCGGTTATTTCGGCACGGGTAGAAGTCCGGAGATTTCTAATTCTGGACAAGAAAATGGCGTCCTCCCCGAACTAAGCAAAACAGAACCTCTAAGGCCCCAGCAAGGAGGCCAAAATTCCTACATGTCTTATAATGTCAATTATTTTAATGACCCCAGATATCTACCAGCAGCAGAGATGAACCTGCCAGTAAATCCTGTAGATTATAATGTTAATGAGAACAACTACGACGACGCCACGCAACTCAATTGGGCTTCTTCTTCGGGCCCCTTTGCAATGTTAGAAGACAATCCCTTATTTCCACAATTATAG 1041 44.67 MGRVKLKIKRLDNTNGRQATFAKRKHGIMKKANELSILCDIDIILLMFSPSGKPSLCSGKRSIEEVIAKFAQQTPQERAKKKLDSLETLRKTFEKLDHDVNIQDFLGTSSQTIEDLAAQAKLLRTQLSEVHQRLSYWGNADKINNVDHLTQMEDSLRDSLQQVQAHKENLQKHPPVPLEFPNQMQDGMLPFDLSVEQQLQQLQQLQHLSWIPSDNQNMVLHDDPNFVPHRDVECSASSSFASYPGYFGTGRSPEISNSGQENGVLPELSKTEPLRPQQGGQNSYMSYNVNYFNDPRYLPAAEMNLPVNPVDYNVNENNYDDATQLNWASSSGPFAMLEDNPLFPQL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33886834 33890912 + Sed0013054.1 Sed07g1935 720799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1935 346 Coils Coil 149 173 - -
Sed07g1935 346 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Sed07g1935 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 Coils Coil 76 96 - -
Sed07g1935 346 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Sed07g1935 346 Gene3D - 13 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 255 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed07g1935 346 Coils Coil 113 133 - -
Sed07g1935 346 MobiDBLite consensus disorder prediction 252 282 - -
Sed07g1935 346 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1935 346 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2340 Sed-Chr1:17653766 Sed07g1935 Sed-Chr7:33886834 1.60E-65 dispersed
Sed07g1935 Sed-Chr7:33886834 Sed13g0960 Sed-Chr13:7365479 1.00E-24 dispersed
Sed07g1935 Sed-Chr7:33886834 Sed07g1936 Sed-Chr7:33886834 1.00E-149 tandem
Sed06g1309 Sed-Chr6:37358467 Sed07g1935 Sed-Chr7:33886834 4.10E-06 transposed
Sed06g1516 Sed-Chr6:39839151 Sed07g1935 Sed-Chr7:33886834 1.50E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39139 PF00319 SRF-TF 2.80E-18 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1935 - - - 0.0