Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1937 ATGGGTTCTGTCCTTTTCTTTTTGGCAGGTTTGTATGCCATAGTTTCCTCTGTTGAAGCCTATGCAGGTGGAGGGTGGTCTGGCGCACACGCCACGTTCTATGGTGGGAGTGATGCATCTGGGACAATGGGTGGGGCTTGTGGGTATGGTAATTTATACAGCCAAGGGTATGGAACCAACACTGCTGCTCTCAGTACAGCTCTGTTCAACAATGGATTGAGCTGTGGATCTTGCTATGAGATTAAGTGTGCCAATGACCCTAAATGGTGCCTGCCTGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAGTTATGGAGGCTGGTGCAACCCTCCATATCAGCACTTTGATCTCTCTCAGCCTATCTTCCAACACATAGCTCAGTACAAAGCAGGAGTTGTACCTGTCTCTTACAGAAGGGTACCCTGCAGTAGAAGGGGTGGCATAAGGTTCACAATCAATGGACACTCCTACTTCAACCTGGTTCTCATCACAAACGTGGGTGGTGCTGGTGATGTACATGCAGTTTCCATCAAAGGTTCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGCAACAGCTACCTCAACGGCCAAAGCCTCTCCTTTAAGGTAACCACCAGCGACGGCCGTACCGTCATTTCCAACAACGCTGTCCCTGCCGGCTGGTCCTTCGGACAGACTTACAATGGTGCCCAGTTCTAA 732 50.27 MGSVLFFLAGLYAIVSSVEAYAGGGWSGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCANDPKWCLPGSIVVTATNFCPPNSYGGWCNPPYQHFDLSQPIFQHIAQYKAGVVPVSYRRVPCSRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYNGAQF 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33891417 33893151 - Sed0026672.1 Sed07g1937 720801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1937 243 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Sed07g1937 243 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Sed07g1937 243 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576(InterPro)
Sed07g1937 243 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Sed07g1937 243 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Sed07g1937 243 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576(InterPro)
Sed07g1937 243 Gene3D - 12 147 IPR036908 -
Sed07g1937 243 FunFam Expansin 15 147 - -
Sed07g1937 243 Pfam Lytic transglycolase 61 141 IPR009009 -
Sed07g1937 243 SUPERFAMILY PHL pollen allergen 148 239 IPR036749 -
Sed07g1937 243 FunFam Expansin 151 243 - -
Sed07g1937 243 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Sed07g1937 243 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Sed07g1937 243 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Sed07g1937 243 PRINTS Expansin signature 126 139 IPR002963 GO:0009664(InterPro)
Sed07g1937 243 PRINTS Expansin signature 226 242 IPR002963 GO:0009664(InterPro)
Sed07g1937 243 PRINTS Expansin signature 162 183 IPR002963 GO:0009664(InterPro)
Sed07g1937 243 PRINTS Expansin signature 109 126 IPR002963 GO:0009664(InterPro)
Sed07g1937 243 PRINTS Expansin signature 197 218 IPR002963 GO:0009664(InterPro)
Sed07g1937 243 PRINTS Expansin signature 150 162 IPR002963 GO:0009664(InterPro)
Sed07g1937 243 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Sed07g1937 243 SUPERFAMILY Barwin-like endoglucanases 25 169 IPR036908 -
Sed07g1937 243 CDD DPBB_EXPA_N 25 146 - -
Sed07g1937 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 151 IPR007112 -
Sed07g1937 243 Gene3D - 151 243 IPR036749 -
Sed07g1937 243 PANTHER EXPANSIN-A15 13 243 IPR002963 GO:0009664(InterPro)
Sed07g1937 243 SMART dpbb_1 61 141 IPR007112 -
Sed07g1937 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0216 Sed-Chr3:1374385 Sed07g1937 Sed-Chr7:33891417 2.10E-104 dispersed
Sed07g1937 Sed-Chr7:33891417 Sed08g0227 Sed-Chr8:1292903 4.80E-109 dispersed
Sed06g1515 Sed-Chr6:39836514 Sed07g1937 Sed-Chr7:33891417 1.60E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1937 - - - 0.0