Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1949 ATGAAAGCTAGCGAAGAACGTGGAGGGCAGAAGAAAATGTTGGTGAGCTCCCTGTCGGCCATGGTTGCCGAGTCCAGCACCTTCCCTATAGACTTGACGAAGACGAGGCTTCAGCTTCAGTTTCACGGCGAGTCCTCCACAAATGCCTTCAGGGTCGCTTCGGCCATTGTGAAGGAGCAAGGTCCTCTTGGCCTCTACAAGGGCTTGTCTCCGGCCATTCTCAGGCACCTCTTCTATACCCCCACGCGAATCCTTGGATACGAGCACCTCCGACCCCTCCTCGGCACCGATCCCGCCTCTGCTTCCCTTCATGCCAAGGCTCTTGCTGCTGGAATCTCTGGCTCCATTGCCCAGGTTCCCATTTTCCACATTACATATATATATATATATATATATATGCTTCGTCTTACAGACTACCGTTCACCAAATGTAGTGGCTAGTCCTACAGATCTTGTTAAGGTGAGGATGCAAGCTGATGGGCGTCTAATGAGCCAAGGTCTGCAACCCAGATACTTGGGACCTCTCGATGCCTTAACGAAGATAGTGCGTGCAGAAGGGATAATTGGGCTTTGGAAAGGGGCTGTCCCAAATGTTCAAAGAGCTTTTTTGGTCAACATGGGAGAATTAGCCTGCTATGACCATGCAAAACGCTTTGTTATTCAAAATCAAATAGCTGGGGACAACATTTTTGGCCACACCTTTGCCTCGATTCTTTCGGGTTTGTCTGCAACCACCCTGAGTTGTCCAGCTGATGTTGTCAAGACACGAATGATGAATCAAGCTGCTAGCAAGGAAGGAATGGTCAAGTACAATAGCTCTTATGATTGTCTTGTGAAGACTGTTAAAGTTGAAGGATTGAGAGCTCTGTGGAAGGGGTTTTTTCCTACTTGGGCGAGGCTTGGTCCTTGGCAATTTGTCTTCTGGGTGTCTTATGAGAAGCTTCGCAAACTTGCTGGCCTCTCTTCCTTCTAG 972 48.77 MKASEERGGQKKMLVSSLSAMVAESSTFPIDLTKTRLQLQFHGESSTNAFRVASAIVKEQGPLGLYKGLSPAILRHLFYTPTRILGYEHLRPLLGTDPASASLHAKALAAGISGSIAQVPIFHITYIYIYIYMLRLTDYRSPNVVASPTDLVKVRMQADGRLMSQGLQPRYLGPLDALTKIVRAEGIIGLWKGAVPNVQRAFLVNMGELACYDHAKRFVIQNQIAGDNIFGHTFASILSGLSATTLSCPADVVKTRMMNQAASKEGMVKYNSSYDCLVKTVKVEGLRALWKGFFPTWARLGPWQFVFWVSYEKLRKLAGLSSF 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34025449 34027471 + Sed0021515.2 Sed07g1949 720813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1949 323 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 10 118 IPR050391 GO:0009409(PANTHER)|GO:0022857(PANTHER)
Sed07g1949 323 SUPERFAMILY Mitochondrial carrier 144 314 IPR023395 -
Sed07g1949 323 SUPERFAMILY Mitochondrial carrier 11 129 IPR023395 -
Sed07g1949 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 218 IPR018108 -
Sed07g1949 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 93 IPR018108 -
Sed07g1949 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 317 IPR018108 -
Sed07g1949 323 PRINTS Mitochondrial carrier protein signature 25 39 IPR002067 GO:0055085(InterPro)
Sed07g1949 323 PRINTS Mitochondrial carrier protein signature 141 159 IPR002067 GO:0055085(InterPro)
Sed07g1949 323 PRINTS Mitochondrial carrier protein signature 12 25 IPR002067 GO:0055085(InterPro)
Sed07g1949 323 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085(InterPro)
Sed07g1949 323 FunFam mitochondrial uncoupling protein 3 140 320 - -
Sed07g1949 323 Pfam Mitochondrial carrier protein 144 221 IPR018108 -
Sed07g1949 323 Pfam Mitochondrial carrier protein 11 95 IPR018108 -
Sed07g1949 323 Pfam Mitochondrial carrier protein 228 317 IPR018108 -
Sed07g1949 323 Gene3D Mitochondrial carrier domain 11 319 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1949 K15112 - - csv:101217011 471.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1949 Sed-Chr7:34025449 Sed14g0663 Sed-Chr14:6687000 9.70E-41 dispersed
Sed07g1948 Sed-Chr7:34025449 Sed07g1949 Sed-Chr7:34025449 2.20E-164 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g939 . . . . . . Bma14g01655 . Cmo04g01752 . . . . . Sed07g1949 . Cpe01g01479 Bhi07g01537 Tan04g1057 Cmetu10g0340 Lac13g0337 Hepe10g1763 . . Cla05g02425 Cam05g2607 Cec05g2641 Cco05g2679 Clacu05g2609 Cmu05g2462 Cre05g2578 . . Cone6ag0567 . Lsi04g00400 Csa05g02475 Chy10g01023 Cme10g00395 . Blo11g00784 Bda07g01476 . . . . . . . . Cma04g01673 . Car04g01711 . . Cpe07g00162 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011715 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 2 1 1 30