Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1958 ATGAGTTTGGAGGGTTCCGGTACGGCGGCGCCGGGGACGAGCAAGGAGAAGCAGAAGGAGAAAGCGAGAGTGAGTCGGACGTCTCTGATACTGTGGCACGCTCACCAAAACGACTCCACTGCTGTTCGCAAGCTTCTGGAGGAGGATCAGTCCCTTGTCCACGCCACAGATTACGACAGCCGCACCCCTCTCCACGTTGCCTCCCTCCACGGCTGGATCCACGTCGCCCAGTGCTTGCTTCAACACGGAGCTGAGGTCAATGCCCAAGATCGCTGGAACAACACTCCGCTAGCGGATGCGGAAGGAGCTAAAAGGCATGCCATGATTGAGTTATTAACATCTTACGGCGGCCTTTCCTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCCGTTCTTCCTCCTCTGCCTAAAAAATGTGACTGGGAAATTGATCCTACTGAACTGGATTTTTCAAACTCAGCTATTATTGGGAAGGGTTCCTTTGGGGAAATTTTGAAGGCCTATTGGCGTGGAACCCCCGTAGCTGTCAAACGTATTCTTCCATCACTTTCTGATGATAGACTTGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCATCCGAACATAGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAACCACTAATGTTAATCACTGAATACTTAAGAGGGGGCGATCTTCACCAGTACCTCAAGGATAAAGGTTCACTCAGTCCTGCAACGGCCATCAATTTTGCAATGGACATTGCCAGGGGAATGACTTATCTCCACAATGAGCCAAATGTTATAATTCACCGCGACCTGAAACCAAGGAACGTTCTTTTAGTTAACACCGGAGCCGACCATCTAAAAGTTGGTGATTTTGGTCTGAGCAAACTCATCAAGGATCAGAATTCACATGATGTCTACAAAATGACTGGCGAGACTGGGAGCTATCGGTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTGGATGTGTTTTCTTTTGCAATGATATTATACGAGATGCTTGAGGGAGATCCTCCACTGGCGAATTATGAGCCTTATGAAGCTGCCAAATATGTGGCTGAAGGTCATAGACCGGTGTTCCGTGCCAAAGGATACCTTCCCATTTTAAGAGAGTTAACAGAAGAATGCTGGGCAGCTGATATGAACAGGAGACCTTCTTTCTTAGAAATCCTCAAAAAACTTGAAAAGGTCAAAACCAACTGA 1248 46.88 MSLEGSGTAAPGTSKEKQKEKARVSRTSLILWHAHQNDSTAVRKLLEEDQSLVHATDYDSRTPLHVASLHGWIHVAQCLLQHGAEVNAQDRWNNTPLADAEGAKRHAMIELLTSYGGLSYGQNGSHFEPKPVLPPLPKKCDWEIDPTELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFAMDIARGMTYLHNEPNVIIHRDLKPRNVLLVNTGADHLKVGDFGLSKLIKDQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPVFRAKGYLPILRELTEECWAADMNRRPSFLEILKKLEKVKTN 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34163521 34171200 - Sed0006999.1 Sed07g1958 720822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1958 415 Pfam Ankyrin repeats (3 copies) 33 116 IPR002110 GO:0005515(InterPro)
Sed07g1958 415 Gene3D Phosphorylase Kinase; domain 1 136 230 - -
Sed07g1958 415 PIRSF ILK 2 415 - -
Sed07g1958 415 SMART serkin_6 151 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1958 415 Gene3D - 3 125 IPR036770 -
Sed07g1958 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1958 415 PANTHER SERINE-THREONINE PROTEIN KINASE 87 411 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed07g1958 415 ProSitePatterns Protein kinases ATP-binding region signature. 157 178 IPR017441 GO:0005524(InterPro)
Sed07g1958 415 SUPERFAMILY Protein kinase-like (PK-like) 148 412 IPR011009 -
Sed07g1958 415 FunFam Integrin-linked protein kinase family 230 415 - -
Sed07g1958 415 FunFam serine/threonine-protein kinase STY46-like 144 230 - -
Sed07g1958 415 SUPERFAMILY Ankyrin repeat 30 117 IPR036770 -
Sed07g1958 415 SMART ANK_2a 59 88 IPR002110 GO:0005515(InterPro)
Sed07g1958 415 CDD STKc_MAP3K-like 157 409 - -
Sed07g1958 415 Pfam Protein tyrosine and serine/threonine kinase 155 409 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1958 415 ProSiteProfiles Ankyrin repeat region circular profile. 59 91 - -
Sed07g1958 415 ProSiteProfiles Protein kinase domain profile. 151 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1958 415 MobiDBLite consensus disorder prediction 1 22 - -
Sed07g1958 415 Gene3D Transferase(Phosphotransferase) domain 1 231 415 - -
Sed07g1958 415 ProSiteProfiles Ankyrin repeat profile. 59 91 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1958 Sed-Chr7:34163521 Sed08g2714 Sed-Chr8:39061769 1.90E-81 dispersed
Sed06g1505 Sed-Chr6:39732390 Sed07g1958 Sed-Chr7:34163521 3.10E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79539 PF07714 PK_Tyr_Ser-Thr 2.10E-63 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1958 - - - 0.0