Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g1962 | ATGGGTAATGATGAAGAAGAACAGCCTCCGCCGCCGTCGAAATCTAAAGCGTTTCCGTTGCGACCCACCATTAATCTACCGCCACGGACCTCTATGGAGTCGCTCTTCAGTACCGGGTCGGGTTTGGGACTCGGGTTTAGCCCAGGACCCATGACTCTCGTCTCCAGCTTCTTCTCCGATTCCGACGACTGCAAGTCCTTTTCTCAGCTCCTCGCCGGAGCTATGGCGTCTCCGGTGGCTTCTTCTTCGGCTCCGGCGGCGTTTGAGCTTAAGTCGCCGGGTCAGGGACCTTTTGGAATGACACATCAGCAGGCTCTGGCTGAGGTTACTATGCAGGCTGTACAAGCCTATTCTCATAAGCAAATACAAGCAGAATCTTTTTCTTCATCAGTACCACCCTCAGCATCTTCCTCAGAGTTTTTTACTACCTTTCCGGGAGAGAACACTAAAGATTATCTGGTGCCATCTCCATTGCTGAACTCTGCTGTTGCTTCCAAGGAATCATCGGATATCTCTCAATCAGATCAGAGATTGCAATCTTCTTTCTGTAATGTTGATAAGCCGGCTAATGATGGCTACAATTGGAGAAAGTACGGGCAGAAACAAGTGAAGGGTAGTGAATTCCCTCGAAGCTACTACAAGTGCACGCACCCGAATTGTCCTGTTAAGAAAAAGGTCGAACGATCTCTGGAAGGCCAAATCATTGAAATTATTTACAAGGGTGAGCACAACCATGAACAACCTCAGCCAAACAAGCGAGCAAAGGATGTTGCCAATTCTAACGGATATTCAAGTATTCATGGAAATCCTGAGCTATCTTCTCAAGTAAAGAGTCGATATTTGAATAAATTGAATGATCAGATAGCTGTGTCTTCCATTGCAAAGAAGAATCAAGAATCAAGTCATGTTACACAGGAACAGTTGTCGGGTACTAGTGATGGCGAGGGAGGGAGTGAGATAGAAACTGGACTAAATAAAAAAGATGCAGATGAACCTGATGCCAAGAGACAGAATACTGAGGTTAGAGTTTCTGAGGCAGCATCTTCTCATAGAACGCTCACAGAATCCAGAATCATTGTGCAGACGACAAGTGAAGTCGATCTATTGGATGATGGCTTCAGGTGGCGAAAGTACGGGCAGAAATCAGTTAAAGGCAACCCTTACCCCAGGAGCTATTATAAGTGCACAACTCCGGGATGCAATGTTCGTAAACATGTCGAGAGAGCTTCAACAGACCAGAAAGCTGTCATAACGACGTATGAGGGTAAACACAATCACAATGTTCCAGCTGGTAAAATCAGCAGCCACAGTACAGTCAACAGCTACGTTCCTCAGCTAAAATCTCAAAATTTATCCACCGAGAAATTTTCTTCAAGTAACAACACTGATCCTGGGAACTCTCGTCAACAGGCTGTTGGACTCCTACAGTTAAAGAAAGATGAAATAACATAG | 1452 | 45.52 | MGNDEEEQPPPPSKSKAFPLRPTINLPPRTSMESLFSTGSGLGLGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVASSSAPAAFELKSPGQGPFGMTHQQALAEVTMQAVQAYSHKQIQAESFSSSVPPSASSSEFFTTFPGENTKDYLVPSPLLNSAVASKESSDISQSDQRLQSSFCNVDKPANDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQIIEIIYKGEHNHEQPQPNKRAKDVANSNGYSSIHGNPELSSQVKSRYLNKLNDQIAVSSIAKKNQESSHVTQEQLSGTSDGEGGSEIETGLNKKDADEPDAKRQNTEVRVSEAASSHRTLTESRIIVQTTSEVDLLDDGFRWRKYGQKSVKGNPYPRSYYKCTTPGCNVRKHVERASTDQKAVITTYEGKHNHNVPAGKISSHSTVNSYVPQLKSQNLSTEKFSSSNNTDPGNSRQQAVGLLQLKKDEIT | 483 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 34269019 | 34272974 | - | Sed0000607.1 | Sed07g1962 | 720826 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g1962 | 483 | ProSiteProfiles | WRKY domain profile. | 364 | 429 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed07g1962 | 483 | SUPERFAMILY | WRKY DNA-binding domain | 361 | 429 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed07g1962 | 483 | FunFam | WRKY transcription factor 33 | 356 | 422 | - | - | |
| Sed07g1962 | 483 | MobiDBLite | consensus disorder prediction | 449 | 473 | - | - | |
| Sed07g1962 | 483 | MobiDBLite | consensus disorder prediction | 449 | 483 | - | - | |
| Sed07g1962 | 483 | SUPERFAMILY | WRKY DNA-binding domain | 188 | 248 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed07g1962 | 483 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 124 | 452 | IPR044810 | GO:0003700(InterPro) | |
| Sed07g1962 | 483 | Gene3D | WRKY domain | 356 | 422 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed07g1962 | 483 | FunFam | WRKY transcription factor | 176 | 249 | - | - | |
| Sed07g1962 | 483 | MobiDBLite | consensus disorder prediction | 293 | 318 | - | - | |
| Sed07g1962 | 483 | MobiDBLite | consensus disorder prediction | 253 | 271 | - | - | |
| Sed07g1962 | 483 | ProSiteProfiles | WRKY domain profile. | 190 | 248 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed07g1962 | 483 | Gene3D | WRKY domain | 176 | 249 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed07g1962 | 483 | SMART | WRKY_cls | 369 | 428 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed07g1962 | 483 | SMART | WRKY_cls | 189 | 247 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed07g1962 | 483 | MobiDBLite | consensus disorder prediction | 320 | 340 | - | - | |
| Sed07g1962 | 483 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Sed07g1962 | 483 | MobiDBLite | consensus disorder prediction | 293 | 353 | - | - | |
| Sed07g1962 | 483 | Pfam | WRKY DNA -binding domain | 370 | 427 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed07g1962 | 483 | Pfam | WRKY DNA -binding domain | 190 | 246 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed07g1962 | 483 | MobiDBLite | consensus disorder prediction | 241 | 271 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g1962 | Sed-Chr7:34269019 | Sed11g2032 | Sed-Chr11:34377014 | 8.00E-108 | dispersed | |
| Sed02g0179 | Sed-Chr2:33375080 | Sed07g1962 | Sed-Chr7:34269019 | 4.20E-42 | transposed | |
| Sed04g1312 | Sed-Chr4:27426400 | Sed07g1962 | Sed-Chr7:34269019 | 1.00E-54 | transposed | |
| Sed06g1497 | Sed-Chr6:39672743 | Sed07g1962 | Sed-Chr7:34269019 | 4.40E-188 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 39142 | PF03106 | WRKY | 3.50E-25 | CL0274 | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g1962 | - | - | - | 0.0 |