Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1970 ATGGCGGCCGTTTCTCCATCGCCGGCTTCTCCTTCCACTCCATCTCCGTCGCCTCCTCCGCCGTCTCGTCCACCATCTCCGCCTGCTTCTGCAACCCCGCCACCATCATCACCGGAGCCTCCACCACCACCATCGGCAACCCCACCAGTAAGCTCAACTCCACCTCCTGAAGCCCCTCCAAAATCATCATCCCCACCTCAGAACTCACCTCCTCCGCCGCCAGAAGCCAACCCTCCGGTCAATCCACCGCCACCGCCACAGCCCACAAACCCACCAGAGGTTTCGCCCCCCACACGACCATCAGCACCTCCACAAACTTCACCTCCACCCTCAGCACCAATTACTCCTAGAAATTCACCCCCACCACCTGAAAGGCTCACTCCTCCTTCAAGTCCTCTCAAGCCGTTGCCGCCCCCTTCGAATTCGCCACCTCCGCCGTCACATGTTTCGCCTCCACGACCGTCAGGAAATCCTGTTCATAATGGTGGAGTAAACCCTAATTCCAACAGAAATGTGATTGGTAATAGGGGAGTGATTGTAATTGGTGTAGTGGCTGGAATTGTTGTGCTTTCCATAGTTGGGTTTGTTGTATGGTACATTAGGAAGCCAAGGAGAAGTGATTCTGGGCGTGGGGGTTACATTATGCCATCCTCTATGTCTATGGGCTCCTCACCTAAGTCAGGATCATCGCTTATGAAGGTCCATTCCACACTACACCAAGACAGGCATGCCACTAGCCGTGGCAGTGGGAGTGCCAGTGGTGGAATTTACTCTCCCAAAGAGCTTGGTGGGTTGGGAAATTCAAGATCAATGTTTACATATGAAGAACTCTTCAAAGCAACAAGGGCATTTTCTGCTCAAAATCTTTTGGGAGAAGGTGGATTTGGTTCTGTTTATAAGGGATACCTACCAGATGGAAGAGAGGTTGCTGTGAAGAAGCTAAAGATTGGTGGTGGTCAGGGTGAGCAGGAATTCACAGCCGAAGTCGAAATTATTGGTCGCGTACACCACCGCCATTTGGTTTCTCTTGTTGGCTACTGCATCTCCGAGCATCGAAGGCTGCTGGTCTATGATTATGTCCCTAACAATTCCCTTCACTACCATCTTCATGTCAAGGGGAACGGCCAGCTTGTTCTAGACTGGGCAAGACGCGCTAAGATTGCAGCTGGTGCAGCCCGAGGAATAGCTTATCTTCATGAAGACTGCAATCCTCGAATCATTCACCGAGATATCAAATCTTCAAACATTCTTCTTGATCAAAATTTTGAAGCTCGGGTTTCGGACTTTGGACTAGCTAAATTAGCTCTTGATGCAGAAACTCACATAACCACCCGTGTTCTTGGAACTTTTGGATATGTTGCCCCTGAATATGCATCAAGTGGAAAGTTAACTGAGAGATCAGATGTATATTCTTTTGGAGTCGTGCTTCTTGAGCTGATTACTGGTCGGAAGGCTGTCGACGCATCCCAACCATTGGGGAACGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTTGACAGCCAAAATTGTGAAAAATTGGTGGATCCAAGGCTTGAAAAGAACTATGTTGAGAGTGAAATGTTGAAGATGATAGGAATTGCTGCTGCTTGCGTGCGGCATTCGTCTGCGAAGAGACCGCAGATGGGACAGGTTGTTCGAGCTTTTGATCGCTTAGCCACTACAGATTTAAGTAATGGAATGAGATTCGGGGAAAGTCAAGCTTTTGACTCCGGTCAAAAATCTGCCGAGGCTATATTTATCCGAATGCTGACATTTGGTAACGAAGATTACAGTTCAGGTTTTTATAGCCAAAGTAGCTCAAATGCCTGA 1842 49.02 MAAVSPSPASPSTPSPSPPPPSRPPSPPASATPPPSSPEPPPPPSATPPVSSTPPPEAPPKSSSPPQNSPPPPPEANPPVNPPPPPQPTNPPEVSPPTRPSAPPQTSPPPSAPITPRNSPPPPERLTPPSSPLKPLPPPSNSPPPPSHVSPPRPSGNPVHNGGVNPNSNRNVIGNRGVIVIGVVAGIVVLSIVGFVVWYIRKPRRSDSGRGGYIMPSSMSMGSSPKSGSSLMKVHSTLHQDRHATSRGSGSASGGIYSPKELGGLGNSRSMFTYEELFKATRAFSAQNLLGEGGFGSVYKGYLPDGREVAVKKLKIGGGQGEQEFTAEVEIIGRVHHRHLVSLVGYCISEHRRLLVYDYVPNNSLHYHLHVKGNGQLVLDWARRAKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDQNFEARVSDFGLAKLALDAETHITTRVLGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPLGNESLVEWARPLLNHALDSQNCEKLVDPRLEKNYVESEMLKMIGIAAACVRHSSAKRPQMGQVVRAFDRLATTDLSNGMRFGESQAFDSGQKSAEAIFIRMLTFGNEDYSSGFYSQSSSNA 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34482553 34487031 + Sed0008316.1 Sed07g1970 720834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1970 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1970 613 SUPERFAMILY Protein kinase-like (PK-like) 267 557 IPR011009 -
Sed07g1970 613 MobiDBLite consensus disorder prediction 209 255 - -
Sed07g1970 613 Pfam Protein kinase domain 286 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1970 613 PRINTS Proline rich extensin signature 31 43 - -
Sed07g1970 613 PRINTS Proline rich extensin signature 44 65 - -
Sed07g1970 613 PRINTS Proline rich extensin signature 11 27 - -
Sed07g1970 613 CDD STKc_IRAK 290 562 - -
Sed07g1970 613 FunFam Proline-rich receptor-like protein kinase PERK8 257 359 - -
Sed07g1970 613 Gene3D Transferase(Phosphotransferase) domain 1 360 577 - -
Sed07g1970 613 MobiDBLite consensus disorder prediction 217 235 - -
Sed07g1970 613 MobiDBLite consensus disorder prediction 9 153 - -
Sed07g1970 613 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 136 575 IPR047117 -
Sed07g1970 613 SMART serkin_6 284 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1970 613 ProSiteProfiles Protein kinase domain profile. 284 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1970 613 MobiDBLite consensus disorder prediction 1 168 - -
Sed07g1970 613 Gene3D Phosphorylase Kinase; domain 1 259 359 - -
Sed07g1970 613 FunFam proline-rich receptor-like protein kinase PERK8 360 573 - -
Sed07g1970 613 ProSitePatterns Protein kinases ATP-binding region signature. 290 313 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1839 Sed-Chr6:42810567 Sed07g1970 Sed-Chr7:34482553 1.30E-185 dispersed
Sed06g1840 Sed-Chr6:42810567 Sed07g1970 Sed-Chr7:34482553 3.80E-207 dispersed
Sed07g1970 Sed-Chr7:34482553 Sed11g2081 Sed-Chr11:34752321 1.20E-143 dispersed
Sed12g0164 Sed-Chr12:927919 Sed07g1970 Sed-Chr7:34482553 2.20E-68 dispersed
Sed12g0257 Sed-Chr12:1470227 Sed07g1970 Sed-Chr7:34482553 1.20E-48 dispersed
Sed08g2395 Sed-Chr8:37122586 Sed07g1970 Sed-Chr7:34482553 1.40E-55 transposed
Sed13g0948 Sed-Chr13:7181078 Sed07g1970 Sed-Chr7:34482553 4.30E-66 wgd
Sed06g1472 Sed-Chr6:39478834 Sed07g1970 Sed-Chr7:34482553 6.30E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79540 PF00069 Pkinase 1.90E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1970 - - - 0.0