Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1998 ATGGGTTCCAAAGTGTCCTTGCTTCTCATTCTATTGTGTTTGTTCTCATTTTCATCTTCCATTGTTGCAGAATTCGTTAAAGTTTCAGTGAAAGGAGTGACCACCATTGCTGAAACCGACAACGATTTCATCTGTGCGACTCTCGATTGGTGGCCCTCGGATAAATGTGATTACAATCAGTGTCCTTGGGGCAAGGCTGGCCTTCTCAATTTGGATCTGCAGAATGTGATCCTCCAAAATGCAATCAAGGAGTTCAATCCTTTGAGAATTAGAATTGGAGGGTCAGTTCAAGATCAGATCACTTACAGAGTTGGAAGTGGAGTGAGGAATTGCACACCAATGAAGAAACAAAAAGATGGGTTGTTTGGATTCAGTGAAGGTTGTTTCCACATGGCTAGATGGAACGAGCTTTGCAATTTCTTCAACAAAACATCAGCTCGGATCACGTTTGGATTGAATGCTTTGAAGGGGAAAAAACCAGCCAATGATGGAACTATCAATTGGATTGGTGATTGGGATCCTCGTAATGCTAGAGATTTCATCAGATATACAGCCAATAGAGGACACAAAATTGATTCTTATGAACTGGGTAATGAGTTGACTGCTGATGGAGTTTCAGCAAGGCTTGACCCTGCTCAATATGGCAAAGACATCACTGTCATGAGAAAAGTGGTTGAAGAGGTTTATCCTGATCCAAACAACAGACCCCAAATTCTAGGCCCTGCTGGTTTCTTTGACAAAGATTGGTTCCAAACATTCCTCCAAAACACTGACCCAAATGCTGTCACTGGAATCACCCACCATATTTACAATCTTGGTGCAGGTGTTGATCCTGATCTTATCAACAAGATTCAAGATCCCTACTTCTTGGACCAAATTGCTCAAACATTCAAGGAAGCTGCCGAGGTTTCGAGGAGCTTTGCGCCGTGGTCGAAGCCTTGGGTTGGCGAATCTGGTGGTGCTTATAACAGTGGTGGCAAAACTGTTTCTCACACCTTTGCTGATGGCTTCTGGTATTTGGATCAATTGGGCATGACTGCCACATTCGAACACCAAGTTTACTGCAGACAGGCTTTGATTGGTGGAAACTATGCTTTGCTTAACACCACCACTTTCATCCCTAATCCAGACTATTACAGTGCACTTCTATGGCACAGATTGATGGGAAAGAAGGTTCTCTCAGCCTCGCACGACAACTCTCCATATCTTCGTGTCTATTCTCACTGCACCAAAAACAATAGTGGTGTCACGGTTCTCCTAATCAACATGTCGAACTCGACCTATTTCGATGTGAACATCGTGAACGACAGAAACATTTATCCGAACTTTGTTGGAGGCGTGTTGCAGCCAAGAGAAGAGTATCATTTGACTCCAAAAGGTGGTGATGTTCAAAGTGATGTTATGCTTTTGAATGGAGTTCCGCTTCAACTTACATCAAGCTTAGGCATTCCCGACATGACGCCCATTCTTGTCAATCCTACTTCGGCCGTGTCGGTTGCTCCTTATTCTTATGTCTTTGTTAGCATCAAAGACTTTAAAGCTTCTGCTTGTGCCTAA 1557 43.35 MGSKVSLLLILLCLFSFSSSIVAEFVKVSVKGVTTIAETDNDFICATLDWWPSDKCDYNQCPWGKAGLLNLDLQNVILQNAIKEFNPLRIRIGGSVQDQITYRVGSGVRNCTPMKKQKDGLFGFSEGCFHMARWNELCNFFNKTSARITFGLNALKGKKPANDGTINWIGDWDPRNARDFIRYTANRGHKIDSYELGNELTADGVSARLDPAQYGKDITVMRKVVEEVYPDPNNRPQILGPAGFFDKDWFQTFLQNTDPNAVTGITHHIYNLGAGVDPDLINKIQDPYFLDQIAQTFKEAAEVSRSFAPWSKPWVGESGGAYNSGGKTVSHTFADGFWYLDQLGMTATFEHQVYCRQALIGGNYALLNTTTFIPNPDYYSALLWHRLMGKKVLSASHDNSPYLRVYSHCTKNNSGVTVLLINMSNSTYFDVNIVNDRNIYPNFVGGVLQPREEYHLTPKGGDVQSDVMLLNGVPLQLTSSLGIPDMTPILVNPTSAVSVAPYSYVFVSIKDFKASACA 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34910440 34912693 + Sed0016842.1 Sed07g1998 720862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1998 518 FunFam heparanase-like protein 3 63 386 - -
Sed07g1998 518 Gene3D Glycosidases 65 386 - -
Sed07g1998 518 PANTHER HEPARANASE-RELATED 25 518 - GO:0004566(PANTHER)|GO:0009505(PANTHER)
Sed07g1998 518 Pfam Glycosyl hydrolase family 79, N-terminal domain 27 344 IPR005199 GO:0016020(InterPro)|GO:0016798(InterPro)
Sed07g1998 518 SUPERFAMILY (Trans)glycosidases 39 388 IPR017853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1998 Sed-Chr7:34910440 Sed08g0249 Sed-Chr8:1449412 2.40E-150 dispersed
Sed07g1998 Sed-Chr7:34910440 Sed01g2320 Sed-Chr1:17545207 1.80E-153 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1998 K07964 - csv:101214214 876.7