Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1998 ATGGGTTCCAAAGTGTCCTTGCTTCTCATTCTATTGTGTTTGTTCTCATTTTCATCTTCCATTGTTGCAGAATTCGTTAAAGTTTCAGTGAAAGGAGTGACCACCATTGCTGAAACCGACAACGATTTCATCTGTGCGACTCTCGATTGGTGGCCCTCGGATAAATGTGATTACAATCAGTGTCCTTGGGGCAAGGCTGGCCTTCTCAATTTGGATCTGCAGAATGTGATCCTCCAAAATGCAATCAAGGAGTTCAATCCTTTGAGAATTAGAATTGGAGGGTCAGTTCAAGATCAGATCACTTACAGAGTTGGAAGTGGAGTGAGGAATTGCACACCAATGAAGAAACAAAAAGATGGGTTGTTTGGATTCAGTGAAGGTTGTTTCCACATGGCTAGATGGAACGAGCTTTGCAATTTCTTCAACAAAACATCAGCTCGGATCACGTTTGGATTGAATGCTTTGAAGGGGAAAAAACCAGCCAATGATGGAACTATCAATTGGATTGGTGATTGGGATCCTCGTAATGCTAGAGATTTCATCAGATATACAGCCAATAGAGGACACAAAATTGATTCTTATGAACTGGGTAATGAGTTGACTGCTGATGGAGTTTCAGCAAGGCTTGACCCTGCTCAATATGGCAAAGACATCACTGTCATGAGAAAAGTGGTTGAAGAGGTTTATCCTGATCCAAACAACAGACCCCAAATTCTAGGCCCTGCTGGTTTCTTTGACAAAGATTGGTTCCAAACATTCCTCCAAAACACTGACCCAAATGCTGTCACTGGAATCACCCACCATATTTACAATCTTGGTGCAGGTGTTGATCCTGATCTTATCAACAAGATTCAAGATCCCTACTTCTTGGACCAAATTGCTCAAACATTCAAGGAAGCTGCCGAGGTTTCGAGGAGCTTTGCGCCGTGGTCGAAGCCTTGGGTTGGCGAATCTGGTGGTGCTTATAACAGTGGTGGCAAAACTGTTTCTCACACCTTTGCTGATGGCTTCTGGTATTTGGATCAATTGGGCATGACTGCCACATTCGAACACCAAGTTTACTGCAGACAGGCTTTGATTGGTGGAAACTATGCTTTGCTTAACACCACCACTTTCATCCCTAATCCAGACTATTACAGTGCACTTCTATGGCACAGATTGATGGGAAAGAAGGTTCTCTCAGCCTCGCACGACAACTCTCCATATCTTCGTGTCTATTCTCACTGCACCAAAAACAATAGTGGTGTCACGGTTCTCCTAATCAACATGTCGAACTCGACCTATTTCGATGTGAACATCGTGAACGACAGAAACATTTATCCGAACTTTGTTGGAGGCGTGTTGCAGCCAAGAGAAGAGTATCATTTGACTCCAAAAGGTGGTGATGTTCAAAGTGATGTTATGCTTTTGAATGGAGTTCCGCTTCAACTTACATCAAGCTTAGGCATTCCCGACATGACGCCCATTCTTGTCAATCCTACTTCGGCCGTGTCGGTTGCTCCTTATTCTTATGTCTTTGTTAGCATCAAAGACTTTAAAGCTTCTGCTTGTGCCTAA 1557 43.35 MGSKVSLLLILLCLFSFSSSIVAEFVKVSVKGVTTIAETDNDFICATLDWWPSDKCDYNQCPWGKAGLLNLDLQNVILQNAIKEFNPLRIRIGGSVQDQITYRVGSGVRNCTPMKKQKDGLFGFSEGCFHMARWNELCNFFNKTSARITFGLNALKGKKPANDGTINWIGDWDPRNARDFIRYTANRGHKIDSYELGNELTADGVSARLDPAQYGKDITVMRKVVEEVYPDPNNRPQILGPAGFFDKDWFQTFLQNTDPNAVTGITHHIYNLGAGVDPDLINKIQDPYFLDQIAQTFKEAAEVSRSFAPWSKPWVGESGGAYNSGGKTVSHTFADGFWYLDQLGMTATFEHQVYCRQALIGGNYALLNTTTFIPNPDYYSALLWHRLMGKKVLSASHDNSPYLRVYSHCTKNNSGVTVLLINMSNSTYFDVNIVNDRNIYPNFVGGVLQPREEYHLTPKGGDVQSDVMLLNGVPLQLTSSLGIPDMTPILVNPTSAVSVAPYSYVFVSIKDFKASACA 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34910440 34912693 + Sed0016842.1 Sed07g1998 720862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1998 518 FunFam heparanase-like protein 3 63 386 - -
Sed07g1998 518 Gene3D Glycosidases 65 386 - -
Sed07g1998 518 PANTHER HEPARANASE-RELATED 25 518 - GO:0004566(PANTHER)|GO:0009505(PANTHER)
Sed07g1998 518 Pfam Glycosyl hydrolase family 79, N-terminal domain 27 344 IPR005199 GO:0016020(InterPro)|GO:0016798(InterPro)
Sed07g1998 518 SUPERFAMILY (Trans)glycosidases 39 388 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1998 K07964 - - csv:101214214 876.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1998 Sed-Chr7:34910440 Sed08g0249 Sed-Chr8:1449412 2.40E-150 dispersed
Sed07g1998 Sed-Chr7:34910440 Sed01g2320 Sed-Chr1:17545207 1.80E-153 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g70 . . . . . Bpe10g00894 . Bma15g00136 Cmo04g01772 . . . . . Sed07g1998 . Cpe01g01496 Bhi07g01513 Tan04g1024 Cmetu10g0886 Lac13g0362 Hepe10g1783 . . Cla05g02405 Cam05g2582 Cec05g2614 Cco05g2654 Clacu05g2584 Cmu05g2438 Cre05g2555 . . . . Lsi04g00375 Csa05g02498 Chy10g01047 Cme10g00373 Blo06g00925 . . . . . . . . . . Cma04g01691 . Car04g01727 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005423 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 7 1 39