Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2002 ATGGCTCAATTGGGAATCAGAATACAACTAATTTCTACTTTCTTTTTGTTTTTCTTATGGGGTTCTTCTGTAAATGGTTTGCTTACTGCATCTGGTGTCAACTATGAAGTACAAGCCCTGATGGCCATTAAAGCTGCTCTGAAAGACCCACATTCTGTTCTTAATTGGGATGAAAATGCTGTGGATCCATGTAGCTGGAGCATGATCACTTGTTCTCAAGATAAATTTGTCATCAGCTTAGGAGCTCCCAGTCAGAACTTGTCCGGTAGCCTGTCGCCGAGGATCGGAAACTTGACCAATCTTCAGTCAGTGCTTCTACAAGACAACAACATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTTTGCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGATATTCCTACTTCTCTTTCACATCTTAAGAGTTTGCAATATTTGAGATTCAATAACAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAATATGACTCAGCTGGCATTGCTGGACCTGTCTTTTAATAATTTGAGTGGCCCATTGCCCAGATTGTTAGCTAAAACATACAACCTTGCTGGGAATTCACTCATTTGCTCACCTGAGTCCAACCATAGCTGTAATGGAACTGCTCCACCACTCTTATTTGCAGCCAATACTCCTCAAAATCCTCAACCTTTAGGGAGATCCAAGGGCCACAAATTAGCCTTAGCTTTTGGTTCCAGCCTTGGATGCATTTTCCTGCTTACAATTGGATTTGGCTTCTTTATATGGTGGAGGCAACGACACAACCAGCAGATTTTCTTCGATGTTAATGACCAACGATTTGAGGAAGTTAGCCTTGGGAACCTAAGGATTTTCCAGTTCAGAGAGCTTCAAACTGCCACAAACAACTTCAGCAGCAAGAACTTGGTGGGAAAAGGTGGGTTTGGGAATGTATACAAAGGGTACCTTAGAGATGGTACAGTCATAGCAGTGAAGAGGCTAAAAGATGGAAATGCAATAGGAGGAGAAGTCCAATTCCATACTGAAGTCGAAATGATCAGCCTAGCCGTGCACCGGAACCTTCTCCGTCTCTACGGGTTCTGTATGACAACCACAGAGAGACTGTTGGTTTACCCCTATATGTCCAATGGCAGTGTTGCATCCCGTCTCAAAGTGAAGCCGGGTCTGGATTGGAGCACGAGGAAAAGGATAGCACTGGGAGCAGCAAGAGGGTTACTGTATTTGCATGAGCAATGTGATCCTAAGATCATACACAGAGATGTGAAGGCTGCAAATATTTTGCTTGATGATTATTGTGAGGCTGTGGTGGGAGATTTTGGACTGGCAAAGCTGTTGGATCATAGAGATTCACATGTGACAACTGCTGTGAGAGGAACTGTTGGGCATATTGCTCCTGAGTATCTGTCCACTGGCCAATCCTCTGAGAAAACTGATGTCTTTGGATTTGGAATCCTTCTTCTTGAGTTAATCACTGGACAGAGAGCTCTTGAATTTGGCAAAGCTGCAAATCAGAAAGGAGCTATGCTTGATTGGGTAAGTAAAATTCACCAAGAAAAGAAGCTTGATATACTAGTTGACAAGGATCTAAGGAGCGATTACGACTGGATTGAGCTCGAAGAAATGGTTAAAGTAGCTCTGTTGTGCACACAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTAGAAGGGGATGGACTTGTGGAGAAATGGGAAGCTTCTCAAAGGGCAGAGGCAAGCAGGTACAGAGTCAACGAGTTCGCATCTTCCGAGCGATATTCCGATCTTACAGATGATTCTTCCCTTCTTGCACAAGCCATGGAGCTCTCTGGACCAAGATGA 1875 43.89 MAQLGIRIQLISTFFLFFLWGSSVNGLLTASGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSQDKFVISLGAPSQNLSGSLSPRIGNLTNLQSVLLQDNNISGTIPMELGNIPLLDTLDLSSNGFHGDIPTSLSHLKSLQYLRFNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLAKTYNLAGNSLICSPESNHSCNGTAPPLLFAANTPQNPQPLGRSKGHKLALAFGSSLGCIFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVSLGNLRIFQFRELQTATNNFSSKNLVGKGGFGNVYKGYLRDGTVIAVKRLKDGNAIGGEVQFHTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKVKPGLDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVSKIHQEKKLDILVDKDLRSDYDWIELEEMVKVALLCTQYLPTTRPKMSEVVRMLEGDGLVEKWEASQRAEASRYRVNEFASSERYSDLTDDSSLLAQAMELSGPR 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34982001 34986579 + Sed0013428.1 Sed07g2002 720866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2002 624 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Sed07g2002 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2002 624 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 214 - -
Sed07g2002 624 FunFam Somatic embryogenesis receptor-like kinase 1 381 593 - -
Sed07g2002 624 ProSiteProfiles Protein kinase domain profile. 304 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2002 624 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Sed07g2002 624 Pfam Leucine Rich Repeat 100 121 IPR001611 GO:0005515(InterPro)
Sed07g2002 624 Pfam Protein tyrosine and serine/threonine kinase 307 573 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2002 624 Gene3D Ribonuclease Inhibitor 33 214 IPR032675 -
Sed07g2002 624 Gene3D Transferase(Phosphotransferase) domain 1 381 593 - -
Sed07g2002 624 SMART serkin_6 304 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2002 624 SUPERFAMILY L domain-like 35 205 - -
Sed07g2002 624 Pfam Leucine rich repeat 124 183 IPR001611 GO:0005515(InterPro)
Sed07g2002 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 624 - -
Sed07g2002 624 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Sed07g2002 624 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Sed07g2002 624 SUPERFAMILY Protein kinase-like (PK-like) 281 574 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2002 Sed-Chr7:34982001 Sed11g2070 Sed-Chr11:34677154 2.00E-220 dispersed
Sed13g0992 Sed-Chr13:7764733 Sed07g2002 Sed-Chr7:34982001 2.80E-68 wgd
Sed06g1834 Sed-Chr6:42769520 Sed07g2002 Sed-Chr7:34982001 1.80E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79541 PF00069 Pkinase 1.10E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2002 - - - 0.0