Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2016 ATGCTTAGCCGAATCCATCAATGGAAGCCGTTGCATTTTCTTAGGAAGTGCGGGGTACACGCCTCTCCCAGTTCTGTGATCCTTTCCAGGCCTTCCGTTACTGCCGCCCGCCTCGAAGCGGAGTCCGTAGCCTCGTCGCCCTCTGTTCTCGACCGGACCGACCCCGTTCGTGAAATTCTTGCGGGGTTTTCTTCCTTGGGGTTTACAGCCTATGTTGGTGGGTGTAACTTTCCAACTCTGGTTTCTACTTTGAGCGTAACTGCAGTGGATAGCGTTCTTGATCGCTTGAGAATTCAGAACCCTGATTTTGCTCTGCCTTTTTTCTATTTATTGAGAAATGAGTACGGATTTCGGCATTCCCAGTTCTCTCAGTTCGCCGTTTTTCATATTTTAGCGGCTGAAAGACGGTTTAAGGAGTTGCATTCTGTTATAAAGCAGTTGCTTCAGGAGCAAGGGCCGAGTTCTGCACCTTCCTTTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATATTGTGGTATGGGATGTTCTGGCATTTGCGTATTCTAGACATGAAATGATTCATGATGCCCTCTTTATCATTGCAAAGATGAAGGATCTAAATTTGCAACCTTCAGTTCCAACCTATAACTCTATATTGCACAACTTGAGACACACTAACATTGTGTGGGATATATACAACGAAATCAAAGTTAGTGGAGCCCCTCAGAGTGAATATACAACCTCCATACTCATACACGGTCTATGCGAGCAATCCAACTTACAAGATGCAATTTCATTCCTACAGGACAGCAGTGAAGTTAATGGACCTTCTATTGTGTCTATCAATACCGTTATGTCGAAGTGTTGCAAAGTTGGGCTAATAGATGTTGCAAGGTCATTTTTTTGTTTGATGGTCAAGAATGGACTTCTTCCTGATTCATACAGTTATAATATTCTTATTCATGGGCTATGTATAGCAGGTTCCATGGATGAAGCTCTGGAGTTCACGGAGGACATGGAAAAGCATGGTGTTGAACCTGATGTAGTAACATACAACACACTTACCAAAGGGTTTTTCTTACTTGGCTTGATGAGTGGGGCCTTGAAAGTCTTTCAGAATATGTTGCAAAAAGGTTTAAATCCGGATCTTGTAACATACTCAATACTGATATGTGGATATTGTCAGATGGGAAATATTGATGAAGCCCTTAAGCTGCGGCAAGAAACCCTTTCAAGGGGATTTAAGTTGAATATCATTTCCTACAGTGTGCTACTTAGCTGCTTGTGTAAAATTGGACGACTAGAGGAGGCATTGACATTGCTTGATGAAATGGAAACTCTATGTTTGAAACCTGATTTTGTAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTACAAAGGGCTTACCAGCTATATGAACAAATGTGCTTGTATAGAATTTTTCCAAACTACTTTGCTCAACGCGCCGTACTGTTGGGTTTATTCGAGAATGGAAATATATCCGAGGCAAGAAAATATTTTGATGCATTGGCTCACATGGATCTGATAGACGATGTTATTTTGTATAATATTATGATTGATGGTTACGTTAGACTTGGTGATATTGGTGAGGCTGTGCAACTGTATAGCAGAATGATAGAAAGAGGGGTTACTCCAAGTGTTGTGACTTTCAACACTCTTGTCAATGGATTCTGCAAAAGTGGAAACCTAGTGGAGGCCCGAAAGATGTTCGAAACCATTAGGTTGAATGGATTGCAGCCTACTGTAATAACTTATACTACACTCATGAATGCTTACTGTGAAGCGGGAAACATGGAGGAAATGTTTGACCTTCATCATGAGATGGAAGCGAAAGCTGTTGCTCCAACTCATATAACTTATACTGTACGAATCAAAGGACTCTGTAGACTGAATAAGTTGTATGAATCCCTCCAGTTACTAGAGTTTATGCATGAAAAGGGTCTAATGCCAGATCGGATCACATATAATACTATCATTCAATGTTGTTGCAAGTCTAGAGACTTTAAAAAAGCTTTCCAGCTGTATAATGAGATGTTGCTCCATAATCTTGATCCTTCCCATGTAACTTATAATGTACTTATTAATGGTCTTTGTGTTTATGGTGACCTAAAGGATGCTGATCAAATGATGGTTTCTATGGAGGATCGAAATATTAGCTTGACAAAAGTTGCTTATATGACAATGATTAAAGCACATTGTGCTAAGGGCCAAGTGTCTAAAGCATTAGAGTTCTTCAATCAAATGTTGGCTAAGAGGTTTGTTGCTTCCATTAGAGACTATAGCGCTGTCATTAATAGGCTCTGCAAAAGGGGTCTAATTACTGAAGGGAAATACTTCTTTGTTATGATGTTATCCGAAGGCGTAGCTCCGGATTCTGAAATTTGTGAGACAATGCTTAATGCTTTCCATCATCATGGAAAATTCAGTTCAGTGTTTGAATTCCTTGCTATTATAGTTAAATCTGGGTTTCTTTCACATTGA 2505 40.28 MLSRIHQWKPLHFLRKCGVHASPSSVILSRPSVTAARLEAESVASSPSVLDRTDPVREILAGFSSLGFTAYVGGCNFPTLVSTLSVTAVDSVLDRLRIQNPDFALPFFYLLRNEYGFRHSQFSQFAVFHILAAERRFKELHSVIKQLLQEQGPSSAPSFCDLLLNKFRNWDSNIVVWDVLAFAYSRHEMIHDALFIIAKMKDLNLQPSVPTYNSILHNLRHTNIVWDIYNEIKVSGAPQSEYTTSILIHGLCEQSNLQDAISFLQDSSEVNGPSIVSINTVMSKCCKVGLIDVARSFFCLMVKNGLLPDSYSYNILIHGLCIAGSMDEALEFTEDMEKHGVEPDVVTYNTLTKGFFLLGLMSGALKVFQNMLQKGLNPDLVTYSILICGYCQMGNIDEALKLRQETLSRGFKLNIISYSVLLSCLCKIGRLEEALTLLDEMETLCLKPDFVVYSILIHGLCKEGFVQRAYQLYEQMCLYRIFPNYFAQRAVLLGLFENGNISEARKYFDALAHMDLIDDVILYNIMIDGYVRLGDIGEAVQLYSRMIERGVTPSVVTFNTLVNGFCKSGNLVEARKMFETIRLNGLQPTVITYTTLMNAYCEAGNMEEMFDLHHEMEAKAVAPTHITYTVRIKGLCRLNKLYESLQLLEFMHEKGLMPDRITYNTIIQCCCKSRDFKKAFQLYNEMLLHNLDPSHVTYNVLINGLCVYGDLKDADQMMVSMEDRNISLTKVAYMTMIKAHCAKGQVSKALEFFNQMLAKRFVASIRDYSAVINRLCKRGLITEGKYFFVMMLSEGVAPDSEICETMLNAFHHHGKFSSVFEFLAIIVKSGFLSH 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35096567 35103467 - Sed0026487.4 Sed07g2016 720880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 658 IPR002885 -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Sed07g2016 834 Coils Coil 130 150 - -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 694 728 IPR002885 -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Sed07g2016 834 Pfam PPR repeat 374 404 IPR002885 -
Sed07g2016 834 Pfam PPR repeat 340 371 IPR002885 -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Sed07g2016 834 Gene3D Tetratricopeptide repeat domain 651 727 IPR011990 GO:0005515(InterPro)
Sed07g2016 834 Gene3D Tetratricopeptide repeat domain 582 650 IPR011990 GO:0005515(InterPro)
Sed07g2016 834 Gene3D Tetratricopeptide repeat domain 335 407 IPR011990 GO:0005515(InterPro)
Sed07g2016 834 Gene3D Tetratricopeptide repeat domain 513 581 IPR011990 GO:0005515(InterPro)
Sed07g2016 834 Gene3D Tetratricopeptide repeat domain 728 833 IPR011990 GO:0005515(InterPro)
Sed07g2016 834 Gene3D Tetratricopeptide repeat domain 408 502 IPR011990 GO:0005515(InterPro)
Sed07g2016 834 Gene3D Tetratricopeptide repeat domain 80 221 IPR011990 GO:0005515(InterPro)
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Sed07g2016 834 Gene3D Tetratricopeptide repeat domain 222 334 IPR011990 GO:0005515(InterPro)
Sed07g2016 834 NCBIfam pentatricopeptide repeat 591 623 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 661 694 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 731 763 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 381 414 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 451 484 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 522 554 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 346 379 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 768 800 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 696 728 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 311 345 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 416 449 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 276 310 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 556 589 IPR002885 -
Sed07g2016 834 NCBIfam pentatricopeptide repeat 626 659 IPR002885 -
Sed07g2016 834 SUPERFAMILY TPR-like 363 704 IPR011990 GO:0005515(InterPro)
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 659 693 IPR002885 -
Sed07g2016 834 Pfam PPR repeat family 731 777 IPR002885 -
Sed07g2016 834 Pfam PPR repeat family 414 462 IPR002885 -
Sed07g2016 834 Pfam PPR repeat family 588 637 IPR002885 -
Sed07g2016 834 Pfam PPR repeat family 519 567 IPR002885 -
Sed07g2016 834 Pfam PPR repeat family 658 706 IPR002885 -
Sed07g2016 834 Pfam PPR repeat family 273 321 IPR002885 -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 764 798 IPR002885 -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Sed07g2016 834 PANTHER ATPASE EXPRESSION PROTEIN 3 68 510 - -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 729 763 IPR002885 -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Sed07g2016 834 Pfam Pentatricopeptide repeat domain 175 217 IPR002885 -
Sed07g2016 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2016 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2014 Sed-Chr7:35096567 Sed07g2016 Sed-Chr7:35096567 2.30E-17 dispersed
Sed07g2015 Sed-Chr7:35096567 Sed07g2016 Sed-Chr7:35096567 3.00E-17 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32