Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2037 ATGAGCTCTGAAGATAAATCTTCCATGGATTTGGTCCAACCTTCTGAGCATCTCTGTTATGTGAAATGCAACTTTTGCAACACTGTTCTTGCGGTTGGGATTCCATGCAGACGTTTGTTGGATACAGTGACAGTGAAATGTGGTCATTGCAGTAATCTCTCCTTTCTGAGCACAAGGCCCCCTTTACAAGGCCAATGCATTGACCATCCTTTCAGTTTTCAGTCTCAGATTGGCTTCCCAAATGATCTTCGGAAGGGCGCATCGACATCGTCCTCATCGATATCGTCTTCAATGGCGAACGAGCCCCCCTCTCCAAATTTTGTTGTTAAACCTCCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTAAGCGAATCAAAGCTGCCAACCCAGAAGTACCACATCGAGAAGCATTCAGTGCAGCAGCAAAGAATTGGGCTAGGTACATTCCAAATCCAGCTGGTGGGTCCATTTCTGGGACTCGCAACAATAATCTGACAAATCCAGGTGGCGGTCTAGGATTCGATAAAGTTTAA 558 45.34 MSSEDKSSMDLVQPSEHLCYVKCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPFSFQSQIGFPNDLRKGASTSSSSISSSMANEPPSPNFVVKPPEKKHRLPSAYNRFMKEEIKRIKAANPEVPHREAFSAAAKNWARYIPNPAGGSISGTRNNNLTNPGGGLGFDKV 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35501300 35503495 + Sed0007972.1 Sed07g2037 720901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2037 185 Pfam YABBY protein 14 156 IPR006780 GO:0007275(InterPro)
Sed07g2037 185 PANTHER PROTEIN YABBY 6-RELATED 14 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Sed07g2037 185 CDD HMG-box_SF 117 153 - -
Sed07g2037 185 MobiDBLite consensus disorder prediction 82 103 - -
Sed07g2037 185 MobiDBLite consensus disorder prediction 82 113 - -
Sed07g2037 185 FunFam protein CRABS CLAW isoform X3 108 167 - -
Sed07g2037 185 Gene3D High mobility group box domain 102 158 IPR036910 -
Sed07g2037 185 SUPERFAMILY HMG-box 102 154 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2037 K25796 - - csv:101219863 288.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2037 Sed-Chr7:35501300 Sed11g0122 Sed-Chr11:1057656 8.00E-32 dispersed
Sed07g2037 Sed-Chr7:35501300 Sed01g4021 Sed-Chr1:69254375 4.70E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2037 . 1 182 C2C2-YABBY Transcription Factor Family AT1G69180 51.4 2.4e-44 176.4
Sed01g4021 . 62 220 C2C2-YABBY Transcription Factor Family AT2G45190 59.1 1.2e-42 170.6
Sed01g4022 . 1 159 C2C2-YABBY Transcription Factor Family AT2G45190 59.1 1.2e-42 170.6
Sed05g0986 . 69 234 C2C2-YABBY Transcription Factor Family AT2G45190 57.2 2.9e-41 166.0
Sed01g3224 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 68.8 2.1e-56 216.5
Sed01g4021 . 18 210 C2C2-YABBY Transcription Factor Family AT1G08465 52.8 9.1e-44 174.5
Sed12g2369 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 2.0e-43 173.3
Sed08g0677 . 6 179 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 2.9e-42 169.5
Sed05g0986 . 25 224 C2C2-YABBY Transcription Factor Family AT1G08465 50.5 5.0e-42 168.7
Sed08g0678 . 6 164 C2C2-YABBY Transcription Factor Family AT1G08465 54.9 1.1e-41 167.5
Sed11g0122 . 5 179 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.5e-41 166.4
Sed11g0124 . 5 179 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.5e-41 166.4
Sed10g1447 . 8 177 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 3.2e-41 166.0
Sed01g4021 . 29 219 C2C2-YABBY Transcription Factor Family AT4G00180 56.9 6.7e-51 198.4
Sed05g0986 . 36 233 C2C2-YABBY Transcription Factor Family AT4G00180 53.7 5.3e-48 188.7
Sed01g4022 . 1 158 C2C2-YABBY Transcription Factor Family AT4G00180 54.7 1.4e-37 154.1
Sed04g0622 . 1 171 C2C2-YABBY Transcription Factor Family AT1G23420 51.4 1.3e-40 164.5
Sed08g0677 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.4 3.9e-62 235.3
Sed08g0678 . 8 160 C2C2-YABBY Transcription Factor Family AT2G26580 74.8 8.7e-62 234.2
Sed12g2369 . 7 169 C2C2-YABBY Transcription Factor Family AT2G26580 73.0 1.1e-61 233.8
Sed11g0122 . 9 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.3e-61 232.3
Sed11g0124 . 9 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.3e-61 232.3
Sed10g1447 . 10 168 C2C2-YABBY Transcription Factor Family AT2G26580 73.8 1.3e-60 230.3
Sed11g0123 . 4 147 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 4.0e-51 198.7
Sed01g3224 . 1 169 C2C2-YABBY Transcription Factor Family AT2G26580 60.9 3.2e-48 189.1
Sed01g4021 . 20 182 C2C2-YABBY Transcription Factor Family AT2G26580 55.0 1.1e-43 174.1
Sed05g0986 . 25 197 C2C2-YABBY Transcription Factor Family AT2G26580 54.3 1.4e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39146 PF04690 YABBY 5.40E-52 CL0114 Sed TF