Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2037 ATGAGCTCTGAAGATAAATCTTCCATGGATTTGGTCCAACCTTCTGAGCATCTCTGTTATGTGAAATGCAACTTTTGCAACACTGTTCTTGCGGTTGGGATTCCATGCAGACGTTTGTTGGATACAGTGACAGTGAAATGTGGTCATTGCAGTAATCTCTCCTTTCTGAGCACAAGGCCCCCTTTACAAGGCCAATGCATTGACCATCCTTTCAGTTTTCAGTCTCAGATTGGCTTCCCAAATGATCTTCGGAAGGGCGCATCGACATCGTCCTCATCGATATCGTCTTCAATGGCGAACGAGCCCCCCTCTCCAAATTTTGTTGTTAAACCTCCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTAAGCGAATCAAAGCTGCCAACCCAGAAGTACCACATCGAGAAGCATTCAGTGCAGCAGCAAAGAATTGGGCTAGGTACATTCCAAATCCAGCTGGTGGGTCCATTTCTGGGACTCGCAACAATAATCTGACAAATCCAGGTGGCGGTCTAGGATTCGATAAAGTTTAA 558 45.34 MSSEDKSSMDLVQPSEHLCYVKCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPFSFQSQIGFPNDLRKGASTSSSSISSSMANEPPSPNFVVKPPEKKHRLPSAYNRFMKEEIKRIKAANPEVPHREAFSAAAKNWARYIPNPAGGSISGTRNNNLTNPGGGLGFDKV 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35501300 35503495 + Sed0007972.1 Sed07g2037 720901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2037 185 Pfam YABBY protein 14 156 IPR006780 GO:0007275(InterPro)
Sed07g2037 185 PANTHER PROTEIN YABBY 6-RELATED 14 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Sed07g2037 185 CDD HMG-box_SF 117 153 - -
Sed07g2037 185 MobiDBLite consensus disorder prediction 82 103 - -
Sed07g2037 185 MobiDBLite consensus disorder prediction 82 113 - -
Sed07g2037 185 FunFam protein CRABS CLAW isoform X3 108 167 - -
Sed07g2037 185 Gene3D High mobility group box domain 102 158 IPR036910 -
Sed07g2037 185 SUPERFAMILY HMG-box 102 154 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2037 Sed-Chr7:35501300 Sed11g0122 Sed-Chr11:1057656 8.00E-32 dispersed
Sed07g2037 Sed-Chr7:35501300 Sed01g4021 Sed-Chr1:69254375 4.70E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39146 PF04690 YABBY 5.40E-52 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2037 K25796 - csv:101219863 288.115