Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2041 ATGGATCCCCGCAGTCGCAGAACCACCAACAAATCCGATCTCTACTCCACCGTTGTCGTCCATTCCAATTCCGATTCCGACTCCGACAACAATCCCGCCGATCGGAACCTTCCCCGCCGACCAAGGCCCCCCACCCAACCAGACCCATACGCCACAATGGTCTACAAGGACGTTGATAAGCCCCGCCAGGACGACGATGATGACGACGATTCGTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGTGGAGCCCCGATTGACTACGACGACGATGATGATTTTGGATTTCATCGCGATTCTGAAGATTTCGGTACTATGATTGTCAAGACCGATCGAAATCGGCCTTCGGTTTCGACCAAACCATTGCCGTTCGTGAGCTCCGGGATGAGAGCAGGCGGTAGAGATGGTAGTGAAGAAGGGGACGAGAGCGAGGAAGACGATGGCGATGGGTTTTCGACGTTCGTGGTGAGGCCGGCCGCGAGGACGCGGAACAGAGAATCTGTTAGCGGGACTGTCGTCCGACGGACCGTTGTTAGTCGTAGTGATACCAGAGATGGAGGCGGAGGACTTGAGGGGTCCACGATGAGCAGAGCGGTGGCGAGTATGCAAGGAATGCGAGATTTAGGGTTTGGGAAGCAGAGGAAGGGGAGTGGATCGCCGAAGATTGAGGATGGCGGTGGTCGGGTGCGCAGCAAGGTATCTTCGAGTTCGATTCCTGAAAGCATTACCAGGGAAGATCCACATTCTAAGTATGAACTGCTCAACGAACTTGGAAAGGGGTCATATGGGGCTGTTTATAAAGCTAGGGATCTCAAAACCTCTGAGCTGGTTGCGATCAAGGTCATTTCTTTGAGCGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATAGAGATGTTGCAGCAATGCAGTCATCCCAATGTTGTCCGCTACCTCGGGAGCTATCAAGGCGAGGAGTATCTATGGATAGTAATGGAGTATTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAGCCACTAGAGGAATATCAAATAGCATATATCTGCAGGGAGTCGTTGAAGGGCCTCACTTATCTTCACTCAATATTCAAAGTTCATAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGTGATTTTGGTGTTGCAGCCCAGCTAACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGCCGATACGATGGGAAGGTAGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCCGTGCATCCAATGAGGGTTTTATTCATGATATCTATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGGTGTTCCATGATTTTGTTGCAAAGTGTCTGACAAAAGATACTCGTTCACGTCCTGCTGCTTCTGAGATGTTAAAGCATAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATCGATAAGGCTAGGAAAGTCAGGACTTTGATGGCTCAACAAGCAAATACTATTGCTCCAGATGCATCGGGGGATGGAACTATAGTAGCTGCAAAGTTGAATCAAGATTACGGAGATACTGTTCCTTCAAAGCCTCAGAATATTGGACTTCAGGTAGGAAATGAAATGCCATCCGGTGGCACTTGGAGAAAGCAAGAGCAATCGGGAGCAGAACCTGTAGCAGAAGGCACTTTCGGTACTGTAATAATTCATGATGGAGATGGAAACGATAAGTTGGCCTCTCAACTGGATATTGGCAATTCAGAAACACCAACAGGTCCTTCAAGCAATGAAGGGTTATCCGTTTCAGGAGTCAAAATTGTCGACTCTAGTGTGGTGGATCGTATGGGAGGTATTGTAAATAGTATTCTTGATGGAAAATCAGATCTCGCCATGCATGCATCTCCACCTTCATTTTTGGGTATTCATGACCTCAGCACATTGAAGAATGAAACTGTAAGCCGGAAATCTTTTGCTCTACAGGACAAGCTTTGGTCGATTTATGCAGCGGGAAATACCGTACCTATTCCGTTCTTGAGGGCTACTGATATCTCCCCCATTGCTTTGTTATCTGATAATGTCCTTGGAGGCATGCAGCAAGATAATAGGGGGACTGTAGCAGTGGAAGCGCTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGAGTCGCAGGGGACAAAATGAGATGCCTCTTCCACCCAGTGTTTTTCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCTCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGATATGCCGCTTCAGGAGTTGCAGGCGACACAAGAACAACAAACCATTCAAAATCTTTGTGATACACTTAGAACCATCCTTCGATTGTAG 2481 47.56 MDPRSRRTTNKSDLYSTVVVHSNSDSDSDNNPADRNLPRRPRPPTQPDPYATMVYKDVDKPRQDDDDDDDSSLPPLLKRLPKDFGGGAPIDYDDDDDFGFHRDSEDFGTMIVKTDRNRPSVSTKPLPFVSSGMRAGGRDGSEEGDESEEDDGDGFSTFVVRPAARTRNRESVSGTVVRRTVVSRSDTRDGGGGLEGSTMSRAVASMQGMRDLGFGKQRKGSGSPKIEDGGGRVRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDLKTSELVAIKVISLSEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEPLEEYQIAYICRESLKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFVAKCLTKDTRSRPAASEMLKHKFIEKCRCGASAMLPKIDKARKVRTLMAQQANTIAPDASGDGTIVAAKLNQDYGDTVPSKPQNIGLQVGNEMPSGGTWRKQEQSGAEPVAEGTFGTVIIHDGDGNDKLASQLDIGNSETPTGPSSNEGLSVSGVKIVDSSVVDRMGGIVNSILDGKSDLAMHASPPSFLGIHDLSTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQQDNRGTVAVEALQELFTGDGQSKKSRRGQNEMPLPPSVFQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35534200 35551523 - Sed0001565.1 Sed07g2041 720905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2041 826 MobiDBLite consensus disorder prediction 1 97 - -
Sed07g2041 826 Gene3D Transferase(Phosphotransferase) domain 1 251 543 - -
Sed07g2041 826 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 230 588 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Sed07g2041 826 MobiDBLite consensus disorder prediction 10 31 - -
Sed07g2041 826 MobiDBLite consensus disorder prediction 213 251 - -
Sed07g2041 826 ProSitePatterns Protein kinases ATP-binding region signature. 261 284 IPR017441 GO:0005524(InterPro)
Sed07g2041 826 ProSiteProfiles Protein kinase domain profile. 255 509 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2041 826 FunFam serine/threonine-protein kinase dst1 isoform X1 252 542 - -
Sed07g2041 826 CDD STKc_MAP4K3_like 254 509 - -
Sed07g2041 826 FunFam Aurora kinase A 247 336 - -
Sed07g2041 826 MobiDBLite consensus disorder prediction 117 156 - -
Sed07g2041 826 Pfam Protein kinase domain 255 509 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2041 826 SMART serkin_6 255 509 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2041 826 SUPERFAMILY Protein kinase-like (PK-like) 248 512 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2557 Sed-Chr5:37455558 Sed07g2041 Sed-Chr7:35534200 6.40E-66 dispersed
Sed06g2046 Sed-Chr6:44514901 Sed07g2041 Sed-Chr7:35534200 1.30E-39 dispersed
Sed07g2041 Sed-Chr7:35534200 Sed14g0232 Sed-Chr14:2566224 8.50E-41 dispersed
Sed07g2041 Sed-Chr7:35534200 Sed04g2410 Sed-Chr4:37424817 7.90E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79542 PF00069 Pkinase 1.70E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2041 - - - 0.0