Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2054 | ATGCGTGGGGAGGATCAAGAAGAGGAACATCATCATAATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAGCAACTACAAAACAACAACAATGATCATATTATATATGGAGATCATCATCCTCATGGGACTGGAAGAGGGTTGTTTTTCCCGGCCGAGGTCGTGTCGCCGGTTTTACAACCATGGCCTCCGCTCAACCCATTTCTGATCCCTCCACCTCCTCCACCACCAACGTCGTTATGCTCGTCTTCATCGTACGGTAGTTTGTTCAACCGGAGACCTAATTGTCTTCAGTTTGCTTATGATGGTCCATCCTCGGCAGACCACCTCGGTCGGATCATATCGACCACGCTTGGACCGGTGGTTCATCCGGGCTCAACGGCCCCCTTTGGGCTACAAGCCGAGCTCGGAAAAATGAGTGCTCAAGAAATAATGGAGGCTAAAGCTCTTGCAGCTTCAAAAAGCCACAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAATCATCTTGCTAAGCTTAGAAGCTTGCTTCCTAGTACCACTAAAACAGACAAAGCTTCATTGTTAGCAGAAGTAATACAACACGTGAAAGAGCTGAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATCCCAACCGAAGTCGACGAGCTGACCGTGGATGATGCCTCGGACGAGATGACGATCAACGGCGGTAAATTTGTAATAAAGGCCTCTCTTTGCTGCGAGGATCGGTCAGATCTCCTCCCCGACCTCATCAAAACGCTGAAATCCTTGCGTTTAAGAACCCTCAAAGCCGAAATCACAACCCTTGGCGGCCGTGTTAGAAACGTCTTGTTCGTCACCGGTGAGGACGACGATCCCGACAACCCAGAACAACAACATCAACCACAACAACAACACGATATCAACTCAATCCAAGAAGCACTCAAGGCTGTGATGGAAAAAACAGGAGGGGATGATTCTTCTTCAGGAAATATTAAAAGACAAAGGACAAATAGCATCAATATCCTTAATTAA | 1053 | 46.44 | MRGEDQEEEHHHNQGECSQTIENMFQEQLLLHQQLQNNNNDHIIYGDHHPHGTGRGLFFPAEVVSPVLQPWPPLNPFLIPPPPPPPTSLCSSSSYGSLFNRRPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDELTVDDASDEMTINGGKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDDPDNPEQQHQPQQQHDINSIQEALKAVMEKTGGDDSSSGNIKRQRTNSINILN | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 35700128 | 35703345 | + | Sed0013926.1 | Sed07g2054 | 720918 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2054 | 350 | CDD | bHLH_AtAIG1_like | 155 | 232 | - | - | |
Sed07g2054 | 350 | MobiDBLite | consensus disorder prediction | 325 | 350 | - | - | |
Sed07g2054 | 350 | Gene3D | - | 155 | 216 | IPR036638 | GO:0046983(InterPro) | |
Sed07g2054 | 350 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 164 | 216 | IPR036638 | GO:0046983(InterPro) | |
Sed07g2054 | 350 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 160 | 209 | IPR011598 | GO:0046983(InterPro) | |
Sed07g2054 | 350 | MobiDBLite | consensus disorder prediction | 330 | 350 | - | - | |
Sed07g2054 | 350 | SMART | finulus | 166 | 215 | IPR011598 | GO:0046983(InterPro) | |
Sed07g2054 | 350 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 135 | 343 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2054 | 350 | Pfam | Helix-loop-helix DNA-binding domain | 163 | 210 | IPR011598 | GO:0046983(InterPro) | |
Sed07g2054 | 350 | FunFam | transcription factor bHLH30 | 155 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0873 | Sed-Chr2:46277267 | Sed07g2054 | Sed-Chr7:35700128 | 1.50E-40 | dispersed | |
Sed03g0370 | Sed-Chr3:2234145 | Sed07g2054 | Sed-Chr7:35700128 | 2.80E-27 | dispersed | |
Sed03g1198 | Sed-Chr3:7629837 | Sed07g2054 | Sed-Chr7:35700128 | 2.10E-82 | dispersed | |
Sed03g1414 | Sed-Chr3:9013457 | Sed07g2054 | Sed-Chr7:35700128 | 6.20E-29 | dispersed | |
Sed04g0207 | Sed-Chr4:1545966 | Sed07g2054 | Sed-Chr7:35700128 | 1.40E-28 | dispersed | |
Sed07g2054 | Sed-Chr7:35700128 | Sed08g2233 | Sed-Chr8:36035440 | 2.80E-25 | dispersed | |
Sed07g2054 | Sed-Chr7:35700128 | Sed11g1583 | Sed-Chr11:31337122 | 8.70E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39148 | PF00010 | HLH | 1.70E-12 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2054 | - | - | - | 0.0 |