Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2054 ATGCGTGGGGAGGATCAAGAAGAGGAACATCATCATAATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAGCAACTACAAAACAACAACAATGATCATATTATATATGGAGATCATCATCCTCATGGGACTGGAAGAGGGTTGTTTTTCCCGGCCGAGGTCGTGTCGCCGGTTTTACAACCATGGCCTCCGCTCAACCCATTTCTGATCCCTCCACCTCCTCCACCACCAACGTCGTTATGCTCGTCTTCATCGTACGGTAGTTTGTTCAACCGGAGACCTAATTGTCTTCAGTTTGCTTATGATGGTCCATCCTCGGCAGACCACCTCGGTCGGATCATATCGACCACGCTTGGACCGGTGGTTCATCCGGGCTCAACGGCCCCCTTTGGGCTACAAGCCGAGCTCGGAAAAATGAGTGCTCAAGAAATAATGGAGGCTAAAGCTCTTGCAGCTTCAAAAAGCCACAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAATCATCTTGCTAAGCTTAGAAGCTTGCTTCCTAGTACCACTAAAACAGACAAAGCTTCATTGTTAGCAGAAGTAATACAACACGTGAAAGAGCTGAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATCCCAACCGAAGTCGACGAGCTGACCGTGGATGATGCCTCGGACGAGATGACGATCAACGGCGGTAAATTTGTAATAAAGGCCTCTCTTTGCTGCGAGGATCGGTCAGATCTCCTCCCCGACCTCATCAAAACGCTGAAATCCTTGCGTTTAAGAACCCTCAAAGCCGAAATCACAACCCTTGGCGGCCGTGTTAGAAACGTCTTGTTCGTCACCGGTGAGGACGACGATCCCGACAACCCAGAACAACAACATCAACCACAACAACAACACGATATCAACTCAATCCAAGAAGCACTCAAGGCTGTGATGGAAAAAACAGGAGGGGATGATTCTTCTTCAGGAAATATTAAAAGACAAAGGACAAATAGCATCAATATCCTTAATTAA 1053 46.44 MRGEDQEEEHHHNQGECSQTIENMFQEQLLLHQQLQNNNNDHIIYGDHHPHGTGRGLFFPAEVVSPVLQPWPPLNPFLIPPPPPPPTSLCSSSSYGSLFNRRPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDELTVDDASDEMTINGGKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDDPDNPEQQHQPQQQHDINSIQEALKAVMEKTGGDDSSSGNIKRQRTNSINILN 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35700128 35703345 + Sed0013926.1 Sed07g2054 720918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2054 350 CDD bHLH_AtAIG1_like 155 232 - -
Sed07g2054 350 MobiDBLite consensus disorder prediction 325 350 - -
Sed07g2054 350 Gene3D - 155 216 IPR036638 GO:0046983(InterPro)
Sed07g2054 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 216 IPR036638 GO:0046983(InterPro)
Sed07g2054 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983(InterPro)
Sed07g2054 350 MobiDBLite consensus disorder prediction 330 350 - -
Sed07g2054 350 SMART finulus 166 215 IPR011598 GO:0046983(InterPro)
Sed07g2054 350 PANTHER TRANSCRIPTION FACTOR BHLH30 135 343 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2054 350 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983(InterPro)
Sed07g2054 350 FunFam transcription factor bHLH30 155 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0873 Sed-Chr2:46277267 Sed07g2054 Sed-Chr7:35700128 1.50E-40 dispersed
Sed03g0370 Sed-Chr3:2234145 Sed07g2054 Sed-Chr7:35700128 2.80E-27 dispersed
Sed03g1198 Sed-Chr3:7629837 Sed07g2054 Sed-Chr7:35700128 2.10E-82 dispersed
Sed03g1414 Sed-Chr3:9013457 Sed07g2054 Sed-Chr7:35700128 6.20E-29 dispersed
Sed04g0207 Sed-Chr4:1545966 Sed07g2054 Sed-Chr7:35700128 1.40E-28 dispersed
Sed07g2054 Sed-Chr7:35700128 Sed08g2233 Sed-Chr8:36035440 2.80E-25 dispersed
Sed07g2054 Sed-Chr7:35700128 Sed11g1583 Sed-Chr11:31337122 8.70E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39148 PF00010 HLH 1.70E-12 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2054 - - - 0.0