Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2058 ATGGATGGAATTTGCATTGACAAGACTGAAATTCTCAAATCGGCGCCGCCGCCGGAGACCAGTCTCTGCCGGCTCGGGAGCGGCGCCACCAGTGTGGTGTTGGACTCATCGGACTCCTCCACCGGCGTGGAGGCAGAGTCCCGGAAACTGCCGTCGTCGCGTTACAAGGGAGTGGTCCCACAGCCGAACGGCCGGTGGGGGGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGGACGTTCAACGAAGAGGACGAAGCCGCACGTGCCTACGACGTCGCCGCCCAACGCTTCCGCGGCCGCGACGCCGTCACCAATTTCAAGCCCTCCTCCTCTAACGGCGGAGAAGAAGACGACGTCGTCGTATCCGCCTTCCTCGACTCCCACTCCAAGGCGGAGATCGTGGACATGCTACGTAAGCACACCTACCTGGACGAGCTCCAGCAGAGCAAGCGAAACGCCGGGTTGTTCGGGTCGGATCAAAAGCGGAACCGCCTCCTCCCCCCCGACCCGGAACGCGCTCGCGAATTTCTCTTCGAAAAGGCCGTCACTCCGAGCGATGTGGGAAAGCTGAACCGTTTGGTTATCCCGAAACAACACGCCGAAAAAAACTTCCCTCTCCAGACCGGCTCGACCGCTTCCTCCAAGGGTCTCCTTTTGAACTTCGAAGATGGAGGTGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAATAGTAGTCAAAGCTATGTGTTGACCAAAGGTTGGAGCCGGTTCGTGAAGGAGAAGAATCTTAAAGCCGGGGATGTTGTGTGCTTCTTGAAATCGGCCGGCCAAGACAACCAGCTTTTCATTGAATGGAAGGCTAGAAAGAGCCCTCCACCCTCGACCGGATCCGACCTGAACCCGGTTCAGACAATGAGATTGTTTGGAGTGGACATTATCAAAATATCGCCAAATAGTGGGTGCAGTGAGAAAAGGAGACGAGAAATTGAGTTTCTCGCTTTAGAATGTACCAAAAAACAAAGAATAGTAGGAGCATTGTAA 1029 55.39 MDGICIDKTEILKSAPPPETSLCRLGSGATSVVLDSSDSSTGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPSSSNGGEEDDVVVSAFLDSHSKAEIVDMLRKHTYLDELQQSKRNAGLFGSDQKRNRLLPPDPERAREFLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVCFLKSAGQDNQLFIEWKARKSPPPSTGSDLNPVQTMRLFGVDIIKISPNSGCSEKRRREIEFLALECTKKQRIVGAL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35877195 35878772 + Sed0005926.1 Sed07g2058 720922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2058 342 CDD AP2 53 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2058 342 SMART rav1_2 54 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2058 342 Pfam AP2 domain 53 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2058 342 FunFam AP2 domain-containing protein RAP2.8 53 110 - -
Sed07g2058 342 SUPERFAMILY DNA-binding pseudobarrel domain 178 282 IPR015300 -
Sed07g2058 342 ProSiteProfiles AP2/ERF domain profile. 54 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2058 342 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677(InterPro)
Sed07g2058 342 SMART B3_2 180 285 IPR003340 GO:0003677(InterPro)
Sed07g2058 342 CDD B3_DNA 178 267 IPR003340 GO:0003677(InterPro)
Sed07g2058 342 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 53 308 IPR044800 GO:0003700(InterPro)
Sed07g2058 342 Pfam B3 DNA binding domain 180 280 IPR003340 GO:0003677(InterPro)
Sed07g2058 342 ProSiteProfiles B3 DNA-binding domain profile. 180 285 IPR003340 GO:0003677(InterPro)
Sed07g2058 342 Gene3D AP2/ERF domain 53 110 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2058 342 Gene3D - 171 291 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1196 Sed-Chr3:7577351 Sed07g2058 Sed-Chr7:35877195 2.20E-98 dispersed
Sed07g2058 Sed-Chr7:35877195 Sed12g2296 Sed-Chr12:33147931 4.00E-45 dispersed
Sed06g1865 Sed-Chr6:43035548 Sed07g2058 Sed-Chr7:35877195 2.50E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39150 PF02362 B3 1.10E-27 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2058 K09287 - csv:101203784 583.178