Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2064 ATGGCCGCCATATCCACTTCTCTCCTCCTCCTCCTCCTCACCATCCTCTCCACCTCCTTCTCCGCCGCCCTCCCCCGCCGCACCTTCCTCCACGCCCCCAAAACCACCTCCCTCCTCGACGCCGCCGCCTCCATCCAAGCCACCAGGCAGATCTTCTCACTTCAAACCCAATCTCAACTCCATCAACACGATTCCACCCCCTTCACTCTGCAACTCAACTCCAGGATTTCCCTCGCCAAATCTTCCTACCGGGACTACAAATCGCTCACCTCTTCCAGATTAAGGCGCGACTCTGCTCGAGTCACATCCTTGACCGCCAGGTTGGATCCACCCGCCGGTTTCCAGAGTCCCATCGTGTCCGGTGCGAGCCAGGGGAGCGGCGAGTATTTCTCCAGAATCGGAATCGGTAACCCTCCCAGCCCGGTTTACATGGTGCTGGATACCGGAAGTGATGTGAGCTGGGTGCAATGTGCCCCCTGCGCCGATTGCTACGAGCAAACCGATCCCATTTTCGAACCGGCTTCCTCTTCTTCCTTTACTTCTCTGTCTTGCCAAACAGAGCAATGTAAATCGCTCGATGTTTCCGAGTGCCGGAACGGAACTTGCCTCTACGAGGTCTCTTACGGCGACGGATCTTACACCGTCGGCGATTTCGTTACTGAAACGGTTACGCTTGGATCTACTTCGGTTACTGATGTTGCCCTTGGTTGCGGCCATAATAATGAAGGCTTGTTCGTCGGCGCCGCTGGTTTGCTCGGCCTCGGCGGCGGATCGTTGTCGTTTCCTTCTCAACTCAATTCCTCCTCGTTTTCTTACTGCCTCGTCGATCGCGACTCCGATTCCACCTCCACTCTCGATTTCAACTCGCCGATTTCTCCCGATGCGGTAACCGCGCCCCTCCACCGGAACCCTAATTTCGACACGTTTTTTTACCTCGGCGTCACCGGAATGAGCGTCGGCGGTGAGATTCTTCCGATTCCGGAGACGGCGTTTCGAATGAGCGAGGACGGCAACGGCGGGATTATCATCGACTCCGGCACCGCCGTGACGCGGCTGCAGACCGCCGTGTATAACTCCTTGCGCGACGCGTTTGTGAAGCGCACGCGCGAGTTGAAGGCGGCGCGTGGGGTGGCGTTGTTCGATACTTGTTACGACTTGTCGTCGAAGGCTAGAGTGGAGGTGCCGACGGTGTCGTTCCACTTCGCCGGCGGGAAGGAACTGCCGTTGCCGGCCAAGAATTACCTGATTCCGGTGGACTCCGACGGGACGTTTTGTTTTGCGTTTGCGCCTACGGATTCCACGTTGTCCATCCTCGGGAACGCCCAGCAGCAAGGGACACGTGTCGGTTTTGACCTCGCTAATTCGGTCATTGGGTTCTCTCCCAACAAATGCTAA 1395 57.28 MAAISTSLLLLLLTILSTSFSAALPRRTFLHAPKTTSLLDAAASIQATRQIFSLQTQSQLHQHDSTPFTLQLNSRISLAKSSYRDYKSLTSSRLRRDSARVTSLTARLDPPAGFQSPIVSGASQGSGEYFSRIGIGNPPSPVYMVLDTGSDVSWVQCAPCADCYEQTDPIFEPASSSSFTSLSCQTEQCKSLDVSECRNGTCLYEVSYGDGSYTVGDFVTETVTLGSTSVTDVALGCGHNNEGLFVGAAGLLGLGGGSLSFPSQLNSSSFSYCLVDRDSDSTSTLDFNSPISPDAVTAPLHRNPNFDTFFYLGVTGMSVGGEILPIPETAFRMSEDGNGGIIIDSGTAVTRLQTAVYNSLRDAFVKRTRELKAARGVALFDTCYDLSSKARVEVPTVSFHFAGGKELPLPAKNYLIPVDSDGTFCFAFAPTDSTLSILGNAQQQGTRVGFDLANSVIGFSPNKC 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36075346 36077471 + Sed0005731.1 Sed07g2064 720928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2064 464 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 144 155 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed07g2064 464 PANTHER ASPARTYL PROTEASES 52 464 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed07g2064 464 FunFam Probable aspartic protease At2g35615 111 288 - -
Sed07g2064 464 Gene3D Acid Proteases 288 464 IPR021109 -
Sed07g2064 464 ProSiteProfiles Peptidase family A1 domain profile. 129 460 IPR033121 -
Sed07g2064 464 FunFam Aspartyl protease family protein 2 289 464 - -
Sed07g2064 464 Gene3D Acid Proteases 106 287 IPR021109 -
Sed07g2064 464 Pfam Xylanase inhibitor N-terminal 129 286 IPR032861 -
Sed07g2064 464 Pfam Xylanase inhibitor C-terminal 310 460 IPR032799 -
Sed07g2064 464 SUPERFAMILY Acid proteases 123 464 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2064 K22683 - - csv:101222856 701.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1710 Sed-Chr1:12443507 Sed07g2064 Sed-Chr7:36075346 4.40E-154 dispersed
Sed07g2064 Sed-Chr7:36075346 Sed07g2372 Sed-Chr7:39575854 6.10E-113 dispersed
Sed12g2065 Sed-Chr12:31448809 Sed07g2064 Sed-Chr7:36075346 6.10E-118 wgd
Sed07g2064 Sed-Chr7:36075346 Sed08g0345 Sed-Chr8:2092328 3.60E-129 wgd
Sed07g2064 Sed-Chr7:36075346 Sed08g2169 Sed-Chr8:35614520 3.90E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g277 . . . . . Bpe10g00945 . Bma15g00079 . Cmo18g01052 . Cma18g01036 . Car18g00961 Sed07g2064 Cpe09g00282 . Bhi07g01357 Tan04g0891 Cmetu10g1611 Lac13g0470 Hepe01g1214 . . Cla05g02322 Cam05g2494 Cec05g2518 Cco05g2560 Clacu05g2488 Cmu05g2351 Cre05g2467 Cone13ag0848 Cone19ag0851 . . Lsi04g00280 Csa05g02091 Chy10g01124 Cme10g00282 Blo06g00969 . . . . . . . . . . . . . . . Cpe04g01410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002030 1 2 1 2 2 2 4 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 66