Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2092 | ATGAGCTGCAATGGGTGTCGGATCCTTCGCAAAGGATGCAGCCATGACTGCATAATTAGACCTTGTCTTCAATGGATCCCCTCGCCGGATTCTCAGGCCAATGCCACCAGTTTTCTCGCAAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCGCCGCCGCCGCCGAGCCCCTCCGCCCCGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTTAATCCTGTGTACGGTTCGGTCGGATTACTCTACTCGGGCGACTGGGAAAGGTGTCAGGCCGCTGTCGATGCCGTCTTGACCGGATCCATGAACGTCGAACCCAACGCGCCGCCCGCAGACGCCAACATTTCCCTCAAATCCTGCGACATTCGCCATGTTAGTAACGACACCAATTTGGGCACTTCGGGCGAGCCTCATAAGGTCAAGACTCGGAACCGGTTCAAGAAGCCCGACCACCGGACCAAACCCGGTCCGGTTCATGAATTGGGAAGTGGGTCTGGCTCGAACCCCAGGCTGGAAGAGGTGGAGGATTTGATGATGAACCACATGGAACCGGGTCGGGTTACCGAGACCGGTGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTGA | 621 | 57.17 | MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATSFLAKFYGRAGLFNLIAAAAEPLRPAIFKSLLYEACGRMVNPVYGSVGLLYSGDWERCQAAVDAVLTGSMNVEPNAPPADANISLKSCDIRHVSNDTNLGTSGEPHKVKTRNRFKKPDHRTKPGPVHELGSGSGSNPRLEEVEDLMMNHMEPGRVTETGVELELTLNSAQ | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 36329658 | 36331937 | - | Sed0006177.1 | Sed07g2092 | 720956 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2092 | 206 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - | |
Sed07g2092 | 206 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 101 | IPR004883 | - | |
Sed07g2092 | 206 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 168 | - | GO:0010468(PANTHER) | |
Sed07g2092 | 206 | MobiDBLite | consensus disorder prediction | 132 | 174 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2663 | Sed-Chr5:38101877 | Sed07g2092 | Sed-Chr7:36329658 | 4.90E-51 | dispersed | |
Sed07g2092 | Sed-Chr7:36329658 | Sed10g0704 | Sed-Chr10:4931641 | 1.70E-38 | dispersed | |
Sed12g2071 | Sed-Chr12:31483170 | Sed07g2092 | Sed-Chr7:36329658 | 9.00E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39154 | PF03195 | LOB | 9.10E-23 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2092 | - | - | - | 0.0 |