Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2092 ATGAGCTGCAATGGGTGTCGGATCCTTCGCAAAGGATGCAGCCATGACTGCATAATTAGACCTTGTCTTCAATGGATCCCCTCGCCGGATTCTCAGGCCAATGCCACCAGTTTTCTCGCAAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCGCCGCCGCCGCCGAGCCCCTCCGCCCCGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTTAATCCTGTGTACGGTTCGGTCGGATTACTCTACTCGGGCGACTGGGAAAGGTGTCAGGCCGCTGTCGATGCCGTCTTGACCGGATCCATGAACGTCGAACCCAACGCGCCGCCCGCAGACGCCAACATTTCCCTCAAATCCTGCGACATTCGCCATGTTAGTAACGACACCAATTTGGGCACTTCGGGCGAGCCTCATAAGGTCAAGACTCGGAACCGGTTCAAGAAGCCCGACCACCGGACCAAACCCGGTCCGGTTCATGAATTGGGAAGTGGGTCTGGCTCGAACCCCAGGCTGGAAGAGGTGGAGGATTTGATGATGAACCACATGGAACCGGGTCGGGTTACCGAGACCGGTGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTGA 621 57.17 MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATSFLAKFYGRAGLFNLIAAAAEPLRPAIFKSLLYEACGRMVNPVYGSVGLLYSGDWERCQAAVDAVLTGSMNVEPNAPPADANISLKSCDIRHVSNDTNLGTSGEPHKVKTRNRFKKPDHRTKPGPVHELGSGSGSNPRLEEVEDLMMNHMEPGRVTETGVELELTLNSAQ 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36329658 36331937 - Sed0006177.1 Sed07g2092 720956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2092 206 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Sed07g2092 206 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Sed07g2092 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 168 - GO:0010468(PANTHER)
Sed07g2092 206 MobiDBLite consensus disorder prediction 132 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2663 Sed-Chr5:38101877 Sed07g2092 Sed-Chr7:36329658 4.90E-51 dispersed
Sed07g2092 Sed-Chr7:36329658 Sed10g0704 Sed-Chr10:4931641 1.70E-38 dispersed
Sed12g2071 Sed-Chr12:31483170 Sed07g2092 Sed-Chr7:36329658 9.00E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39154 PF03195 LOB 9.10E-23 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2092 - - - 0.0