Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2105 ATGGCTTCCAGAGAAAGGAGGCGTCGCCATCATCATCGTGAGAATCTTGTGCCTCTTGCTGTTTTGATCAGAAACGAGGTGAGGATCAATGAGAGATTGGAGAAACCGAGTGTAAGATATGGGAATGCAGCTCAGTCTAGAAAAGGGGAGGATTGTTTTCTCATCAAAACTGATTGTCACCGAGTTCATGCCAACCCTTCTTCCACTTTCTCTGTTTTTGCTATATTTGACGGACACAATGGAAATGCTGCAGCGATTTTTACGAGGGAACATTTGTTGAAACATGTCGTGGGTGCACTTCCCCGTGGCCTCGGACAGCAGGAGTGGCTTCAAGCTCTACCGCGAGCTTTGGTTGCTGGATTTGTGAAGACAGACAAAGAGTTTCAGAGCAAAGGTGAAACTTCTGGAACTACAGCTACGTTTGTAATCATCGATGGATGGACAGTGACAGTAGCATCGGTTGGAGATTCTCGATGTATTTTAGATACTCAGGGCGGTGCTGTCTCTGCTTTAACGGTTGATCATAGGCTTGAAGAGAATGTTGAAGAAAGAGAACGTGTGACTGCAAGTGGTGGGGAAATTGGAAGATTAAGTATTGTTGGTGGTGCTGAGATCGGCCCGCTCCGTTGTTGGCCAGGAGGCTTGTGCCTTTCTCGATCAATTGGAGACATGGATGTGGGGGAGTTTATAGTTCCGATTCCATTCGTGAAACAAGTAAAGTTATCAAATGCAGGTGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGACGCCCTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCCGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTAAGAACAAGGGGATTGAAAGATGATACAACATGCATAGTTGTTGACATAATTCCGCCTGATAATTCGGCACAGTCTTCCCCTACCCCGAAGAAACAAAGTGTACTGAAATCTCTATTGTTCAGGAAGAAGTCTAACAATTCTAATAAGCTATCGAAGAGGCTATCCGCTATCGGTCTCGTGGAAGAATTATTTGAAGACGGCTCTGCCATGTTGGCTGAAAGGCTTGGATCTGTAGAGTTGAGTGGATCTGGACATGGAACACACAGCCTATTCACTTGTGCTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCTTGGCAGGGGCCTTTCCTGTGTGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAACGCCCAAGCGGGGTGAGAGTCGTGTAG 1302 47.16 MASRERRRRHHHRENLVPLAVLIRNEVRINERLEKPSVRYGNAAQSRKGEDCFLIKTDCHRVHANPSSTFSVFAIFDGHNGNAAAIFTREHLLKHVVGALPRGLGQQEWLQALPRALVAGFVKTDKEFQSKGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPTPKKQSVLKSLLFRKKSNNSNKLSKRLSAIGLVEELFEDGSAMLAERLGSVELSGSGHGTHSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVV 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36563505 36567765 - Sed0015652.1 Sed07g2105 720969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2105 433 FunFam probable protein phosphatase 2C 5 39 306 - -
Sed07g2105 433 SMART PP2C_SIG_2 47 301 IPR001932 -
Sed07g2105 433 CDD PP2Cc 48 301 IPR001932 -
Sed07g2105 433 Pfam Protein phosphatase 2C 62 286 IPR001932 -
Sed07g2105 433 Gene3D - 40 309 IPR036457 -
Sed07g2105 433 ProSiteProfiles PPM-type phosphatase domain profile. 32 301 IPR001932 -
Sed07g2105 433 PANTHER PROTEIN PHOSPHATASE 40 300 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g2105 433 SMART PP2C_4 29 299 IPR001932 -
Sed07g2105 433 SUPERFAMILY PP2C-like 46 301 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2651 Sed-Chr1:21139485 Sed07g2105 Sed-Chr7:36563505 1.10E-135 dispersed
Sed07g2105 Sed-Chr7:36563505 Sed13g1733 Sed-Chr13:22324029 3.70E-136 dispersed
Sed07g2105 Sed-Chr7:36563505 Sed07g2106 Sed-Chr7:36563505 1.60E-245 tandem
Sed04g0424 Sed-Chr4:3117903 Sed07g2105 Sed-Chr7:36563505 2.10E-168 transposed
Sed06g1909 Sed-Chr6:43446756 Sed07g2105 Sed-Chr7:36563505 1.50E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2105 - - - 0.0