Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2107 ATGGCGTTATTCTGTTTCATTTTGCTCTTTGTTGTTTCTCATCTTCTTGCTTGTCCTTTGGCTTGGACTGATAGCAGATGGGTTCATGTTCATCCATATTGCCCGACCTTCAATTGTGGGAATTTGGGCCTCATAGGATTCCCTTTTAACAACGAAACACTCCCTGATTGTGGATTATACACAGTTAAGAATTGTTCAGCACAGCCAAAAATCCAGTTGAAACGTGAAGGGGGACTATGGTTTGATGTTGTTAGCATATCTCAGGCTAATGTCATACATATCAATGACGCTGAATTTCAAAAGCGAATTAATGCTCGCAATTGTTCTGTTCTTAACGATCTGGCTCTTCCGAGGTCTCCTTTATCTTCTTTATCCACAGATGATAATGTTACTTTGTATAAATGTACAGACAATCCTATAGGTGCTATTCCCCTTTTCATCAGCGACTTTAGCTGCCCTAGTTATTACACGCTCGTCAATTCTAGGACTTCGCCCAACTGTGCCGCTTCCAACTTTTCAGTTCCAGTTCTCCCGGTTGGTTCCAATGATAGTGTTAGTAGGTTTACTGCTAATTTCCAACTTCAAGTGTCTATATCTAGACTTTGTCTTGAATGTTTTCGTAATGAAGGCCAATGCTTGGATATCCAAGGAAAAGTTTCTTGTACAGATGGAAATCCAAAACGAAAAGATGAAAGTAGCACTAGTAAGAGCTTGTGGATAGCATTAGGTACTGGAGTCCCAGGTGTCATTCTGCTTATGTTATTATTTGCTCTTTGGTTCCGCAGAAAAAGGCGGGCTGCTCCTCACATCCTAACAAGGAATTTATCTTGCGAACCATACTCCAAATTCGACCTGGAAGATGGTGGTGTGTGCTTTGAAGTTCCCGTTTTCTCATATGCTGTACTCGAAATGGCCACTAACAAATTTGATCGTGATAAAGAACTTGGAGATGGTGGTTTTGGAACCGTATACCATGGCAAACTCCATGATGGCCGGGAAGTTGCCGTGAAACGCCTTTATCAACAGAATTATAGACGAGTAGAGCAATTCATGAATGAGGTTAAAATTCTCACTCGCCTCCGCCACAAAAATCTTGTCTCCCTTTATGGATGTACTTCAAAATGCAGTCGTGAACTTCTCCTTGTTTATGAATATGTCGTAAATGGTACTGTTGCTGATCATCTCCATGGCGAACAAGCAAGTTCTAGCTTGCTCACATGGCCTATTAGAATGAGCATTGCCATAGAAACAGCAAGTGCTCTAGTTTATCTTCACGCTTCAGATATCATTCATCGTGATGTGAAGACTACTAACATTCTCCTCGACAATAATTTTTCTGTCAAAGTTGCTGATTTTGGAATCTCTAGACTATTCCCAAACGATGTCAGTCATGTCTCAACTGCTCCTCAAGGGACCCCTGGTTATGTCGATCCTGAGTATTACCATTGTTATCAGCTTACAACCAAGAGCGATGTTTATAGTTTTGGTGTTGTCTTAATCGAGCTTATATCGTCAATGCCAGCCGTTGATATAACAAGGCATCGACATGAAATAAATTTGTCTAACTTAGCCGTGAACAAAATTCTAAGACAGGAAATTGACGAGCTGGTTGATCCGTGCCTCGGGTACCAATCAGACAAAAACATACGACGGATGATATTGGCAGTGGCTTGGCTAGCTTTTCTATGTCTGCAGCAAGACAAGGAAAGGAGACCCACAATGGAAGAAGCACTAGAAACTTTGAAGAGAATTGAGAATGGGGAAGAAAGTGAGAATTTGCTGGATAACAGTTCACCGTTGAAGAGCTTTGATCCATCTCCTTCTCCAGAGTATGATGAGGTTGTCTTGTTGAAGAACAAGAGGCAGCTGTTATCCCCCACTTCTGTTGCTGATAAATGGATCAGTTCATCCTCCTTTGTTAGTGCTTCTACTTCAATATCATCCATTTCTTAA 1953 41.22 MALFCFILLFVVSHLLACPLAWTDSRWVHVHPYCPTFNCGNLGLIGFPFNNETLPDCGLYTVKNCSAQPKIQLKREGGLWFDVVSISQANVIHINDAEFQKRINARNCSVLNDLALPRSPLSSLSTDDNVTLYKCTDNPIGAIPLFISDFSCPSYYTLVNSRTSPNCAASNFSVPVLPVGSNDSVSRFTANFQLQVSISRLCLECFRNEGQCLDIQGKVSCTDGNPKRKDESSTSKSLWIALGTGVPGVILLMLLFALWFRRKRRAAPHILTRNLSCEPYSKFDLEDGGVCFEVPVFSYAVLEMATNKFDRDKELGDGGFGTVYHGKLHDGREVAVKRLYQQNYRRVEQFMNEVKILTRLRHKNLVSLYGCTSKCSRELLLVYEYVVNGTVADHLHGEQASSSLLTWPIRMSIAIETASALVYLHASDIIHRDVKTTNILLDNNFSVKVADFGISRLFPNDVSHVSTAPQGTPGYVDPEYYHCYQLTTKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVNKILRQEIDELVDPCLGYQSDKNIRRMILAVAWLAFLCLQQDKERRPTMEEALETLKRIENGEESENLLDNSSPLKSFDPSPSPEYDEVVLLKNKRQLLSPTSVADKWISSSSFVSASTSISSIS 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36577347 36589761 - Sed0003494.1 Sed07g2107 720971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2107 650 Pfam Protein kinase domain 310 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2107 650 FunFam Wall-associated receptor kinase-like 20 386 593 - -
Sed07g2107 650 SUPERFAMILY Protein kinase-like (PK-like) 294 612 IPR011009 -
Sed07g2107 650 Gene3D Transferase(Phosphotransferase) domain 1 386 601 - -
Sed07g2107 650 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 34 638 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Sed07g2107 650 ProSiteProfiles Protein kinase domain profile. 309 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2107 650 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524(InterPro)
Sed07g2107 650 MobiDBLite consensus disorder prediction 588 610 - -
Sed07g2107 650 CDD STKc_IRAK 315 584 - -
Sed07g2107 650 Gene3D Phosphorylase Kinase; domain 1 286 385 - -
Sed07g2107 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2107 650 SMART serkin_6 309 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2107 Sed-Chr7:36577347 Sed08g0368 Sed-Chr8:2214851 3.10E-123 dispersed
Sed07g2107 Sed-Chr7:36577347 Sed07g2108 Sed-Chr7:36577347 3.70E-241 tandem
Sed12g2091 Sed-Chr12:31645635 Sed07g2107 Sed-Chr7:36577347 3.60E-132 wgd
Sed06g1910 Sed-Chr6:43456289 Sed07g2107 Sed-Chr7:36577347 3.40E-279 wgd
Sed07g2107 Sed-Chr7:36577347 Sed08g0367 Sed-Chr8:2214851 5.30E-123 wgd
Sed07g2107 Sed-Chr7:36577347 Sed08g2196 Sed-Chr8:35825832 8.00E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79550 PF00069 Pkinase 4.60E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2107 - - - 0.0