Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2157 ATGACAATCTCTCCGCCGCCGGTTTCTTCCTGCTCTTCCTCCGATTCCGGCAACAATCTCTCCGCTCCTCACCGCCGCCCGCAATCGGAGAAAACCAGACCCAAACGGCGGCGGAGGAATTGCGACGGCAACGGAATCAACAAAAACAATGCCTCTCCCGCTCGTCGGAGCTCAATTTACAGAGGAGTCACTAGGCACCGCTGGACCGGCCGGTTCGAAGCGCATCTTTGGGACAAGGGTTCGTGGAATAGCGTTCAGAACAAAAAAGGAAGGCAAGGAGCTTACGATAACGAGGAAGCTGCCGCCCGAACTTATGATCTGGCTGCCCTCAAATATTGGGGACCCGTAACCAACCTCAATTTCCCGGCAGAGTCGTACAGGAATGAAATGGAAGAAATGGGGAAAGTGACGAAGGAGGAATATTTGGCGACGTTGCGGCGGCGGAGCAGTGGCTTTTCCAGAGGCGTTTCGAAGTACCGCGGCGTCGCCCGCCACCACCACAACGGCCGCTGGGAGGCTCGGATTGGCCGTGTTTTCGGAACCAAATATCTCTACTTGGGAACTTACGACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAATATAGAGGAGCCAATGCAGTGACAAACTTTGATATTAGCAATTATATTGAGAGGTTAGAGAACAAATCATCACTTTTTCAAGCAGCCGAAGAGCCCAATTACTCCCCTGCTTCTTCTCAAGAAGTAGAACAACAACAACAACAACAACAAACGACATTCTCGGGCACGTCGGGATTCCAATTCTCGTCGATTGAGAACAACCCGACAATGGAGGTCATGGAAGAACCAACACAAGAGGATCTTGATCCACATTGGTCTCTCTTAGACCTCGCATTCATCCAAGTCCCGGATCTTCCAATCGAGGATTCGTGTGAATTAGCCGACCTCTACTTCAATGAGATCGCGTTCGAGGATGACATCGGGTTGATGTTCGAATCAAGCTTAGAGAACGTGAGCATTGAAGGTAATAGTAGAGAAGATGATAATGTTGGGAAGATGGAGATGAACAATGAGAAAATGAGATTGTTGTCAACAACTACTTCACCATCTTCTTCATCAATAACAAACACATGTGAATTTAGGGTTTGA 1143 48.91 MTISPPPVSSCSSSDSGNNLSAPHRRPQSEKTRPKRRRRNCDGNGINKNNASPARRSSIYRGVTRHRWTGRFEAHLWDKGSWNSVQNKKGRQGAYDNEEAAARTYDLAALKYWGPVTNLNFPAESYRNEMEEMGKVTKEEYLATLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGTKYLYLGTYDTQEEAAAAYDMAAIEYRGANAVTNFDISNYIERLENKSSLFQAAEEPNYSPASSQEVEQQQQQQQTTFSGTSGFQFSSIENNPTMEVMEEPTQEDLDPHWSLLDLAFIQVPDLPIEDSCELADLYFNEIAFEDDIGLMFESSLENVSIEGNSREDDNVGKMEMNNEKMRLLSTTTSPSSSSITNTCEFRV 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 37124260 37130282 + Sed0008736.1 Sed07g2157 721021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2157 380 MobiDBLite consensus disorder prediction 1 58 - -
Sed07g2157 380 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 46 255 - -
Sed07g2157 380 SMART rav1_2 158 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2157 380 SMART rav1_2 59 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2157 380 SUPERFAMILY DNA-binding domain 58 123 IPR016177 GO:0003677(InterPro)
Sed07g2157 380 ProSiteProfiles AP2/ERF domain profile. 158 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2157 380 PRINTS Ethylene responsive element binding protein signature 198 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2157 380 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2157 380 ProSiteProfiles AP2/ERF domain profile. 59 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2157 380 CDD AP2 58 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2157 380 MobiDBLite consensus disorder prediction 234 265 - -
Sed07g2157 380 SUPERFAMILY DNA-binding domain 157 218 IPR016177 GO:0003677(InterPro)
Sed07g2157 380 Pfam AP2 domain 157 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2157 380 FunFam AP2-like ethylene-responsive transcription factor 157 218 - -
Sed07g2157 380 Gene3D AP2/ERF domain 157 218 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2157 380 Gene3D AP2/ERF domain 59 124 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2157 380 MobiDBLite consensus disorder prediction 1 25 - -
Sed07g2157 380 CDD AP2 157 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2157 Sed-Chr7:37124260 Sed08g0558 Sed-Chr8:3755793 2.90E-76 dispersed
Sed06g1959 Sed-Chr6:43759643 Sed07g2157 Sed-Chr7:37124260 3.80E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39158 PF00847 AP2 7.30E-09 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2157 - - - 0.0