Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2157 | ATGACAATCTCTCCGCCGCCGGTTTCTTCCTGCTCTTCCTCCGATTCCGGCAACAATCTCTCCGCTCCTCACCGCCGCCCGCAATCGGAGAAAACCAGACCCAAACGGCGGCGGAGGAATTGCGACGGCAACGGAATCAACAAAAACAATGCCTCTCCCGCTCGTCGGAGCTCAATTTACAGAGGAGTCACTAGGCACCGCTGGACCGGCCGGTTCGAAGCGCATCTTTGGGACAAGGGTTCGTGGAATAGCGTTCAGAACAAAAAAGGAAGGCAAGGAGCTTACGATAACGAGGAAGCTGCCGCCCGAACTTATGATCTGGCTGCCCTCAAATATTGGGGACCCGTAACCAACCTCAATTTCCCGGCAGAGTCGTACAGGAATGAAATGGAAGAAATGGGGAAAGTGACGAAGGAGGAATATTTGGCGACGTTGCGGCGGCGGAGCAGTGGCTTTTCCAGAGGCGTTTCGAAGTACCGCGGCGTCGCCCGCCACCACCACAACGGCCGCTGGGAGGCTCGGATTGGCCGTGTTTTCGGAACCAAATATCTCTACTTGGGAACTTACGACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAATATAGAGGAGCCAATGCAGTGACAAACTTTGATATTAGCAATTATATTGAGAGGTTAGAGAACAAATCATCACTTTTTCAAGCAGCCGAAGAGCCCAATTACTCCCCTGCTTCTTCTCAAGAAGTAGAACAACAACAACAACAACAACAAACGACATTCTCGGGCACGTCGGGATTCCAATTCTCGTCGATTGAGAACAACCCGACAATGGAGGTCATGGAAGAACCAACACAAGAGGATCTTGATCCACATTGGTCTCTCTTAGACCTCGCATTCATCCAAGTCCCGGATCTTCCAATCGAGGATTCGTGTGAATTAGCCGACCTCTACTTCAATGAGATCGCGTTCGAGGATGACATCGGGTTGATGTTCGAATCAAGCTTAGAGAACGTGAGCATTGAAGGTAATAGTAGAGAAGATGATAATGTTGGGAAGATGGAGATGAACAATGAGAAAATGAGATTGTTGTCAACAACTACTTCACCATCTTCTTCATCAATAACAAACACATGTGAATTTAGGGTTTGA | 1143 | 48.91 | MTISPPPVSSCSSSDSGNNLSAPHRRPQSEKTRPKRRRRNCDGNGINKNNASPARRSSIYRGVTRHRWTGRFEAHLWDKGSWNSVQNKKGRQGAYDNEEAAARTYDLAALKYWGPVTNLNFPAESYRNEMEEMGKVTKEEYLATLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGTKYLYLGTYDTQEEAAAAYDMAAIEYRGANAVTNFDISNYIERLENKSSLFQAAEEPNYSPASSQEVEQQQQQQQTTFSGTSGFQFSSIENNPTMEVMEEPTQEDLDPHWSLLDLAFIQVPDLPIEDSCELADLYFNEIAFEDDIGLMFESSLENVSIEGNSREDDNVGKMEMNNEKMRLLSTTTSPSSSSITNTCEFRV | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 37124260 | 37130282 | + | Sed0008736.1 | Sed07g2157 | 721021 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2157 | 380 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Sed07g2157 | 380 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 46 | 255 | - | - | |
Sed07g2157 | 380 | SMART | rav1_2 | 158 | 222 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2157 | 380 | SMART | rav1_2 | 59 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2157 | 380 | SUPERFAMILY | DNA-binding domain | 58 | 123 | IPR016177 | GO:0003677(InterPro) | |
Sed07g2157 | 380 | ProSiteProfiles | AP2/ERF domain profile. | 158 | 216 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2157 | 380 | PRINTS | Ethylene responsive element binding protein signature | 198 | 218 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2157 | 380 | PRINTS | Ethylene responsive element binding protein signature | 60 | 71 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2157 | 380 | ProSiteProfiles | AP2/ERF domain profile. | 59 | 122 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2157 | 380 | CDD | AP2 | 58 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2157 | 380 | MobiDBLite | consensus disorder prediction | 234 | 265 | - | - | |
Sed07g2157 | 380 | SUPERFAMILY | DNA-binding domain | 157 | 218 | IPR016177 | GO:0003677(InterPro) | |
Sed07g2157 | 380 | Pfam | AP2 domain | 157 | 208 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2157 | 380 | FunFam | AP2-like ethylene-responsive transcription factor | 157 | 218 | - | - | |
Sed07g2157 | 380 | Gene3D | AP2/ERF domain | 157 | 218 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2157 | 380 | Gene3D | AP2/ERF domain | 59 | 124 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g2157 | 380 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Sed07g2157 | 380 | CDD | AP2 | 157 | 218 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g2157 | Sed-Chr7:37124260 | Sed08g0558 | Sed-Chr8:3755793 | 2.90E-76 | dispersed | |
Sed06g1959 | Sed-Chr6:43759643 | Sed07g2157 | Sed-Chr7:37124260 | 3.80E-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39158 | PF00847 | AP2 | 7.30E-09 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2157 | - | - | - | 0.0 |