Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2158 ATGGAGTCATATTTGACGACGATAATTTATTCTCCTGGCCCTCTATATAAACCCTGTCCCGTTCTTCACTCACCGAGTCACATCCGAGTTACAGAAAAAACCATGAACTCAGTTCCGTTCATCTTCCTTCTCATTCTCTCCCTCCACCTCGCCGGAGCTTCCAATCCTCCGCCGCCGCCGTCAACCGCCGCCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATCATCTCCTCCACCCGATTCTCCCCCTCCGATCCCTATGGCTACGGAAAATTCTCCATAAAACAGTGCCTCAAACAGGCGATCAAAATGTCCACCATAATCGCCGACTACCTCCACAAAAAAGCCGATTCGAGGCTGAATCGAGCTCTGGAAGACTGCAGAGACCTCTCCGATTCGAACATCGAGTTCCTCGGCTCGATTCGAGACGCATTGCAAACGGCGGAGGATCTGGACGAGGAGCTGGTGGAGCGAATCGAGAGTATTCTGAGCGCGATCGTGACCAACGGCCAGACGTGTGTGGACGGATTGGTGGAATCGAGGAGTGATTTGGTGGAATCGATGCACGGCGTTGGGGAGATGTATAGTGTTTCGTTGGGATTGGTTAGGGATTCGCTGTCTCGGCGGTGGAAGAAGCGGCGGAGGAATGGAGGCAGCGGCGGCGGTAGAAGGAGGTTCCCGGTGAGGGCGCGGAGCAGAGAGGCGCTGAACGCGCTGATCAAGGGACTACATAAAATGGGATCATGCAACAACTCCACACTCTGTTCAGGAAGGAAGCGTTTGTTGACTGATTTAGGCACCACAGGAATCTTCATCAGTGACACTGTGGTTGTTAGCTCAACTGGTTTAGACAACTTCACATCAATAGGGGATGCAATTTCATTTGCTCCCAACAATTCAATGCCTGAAGATGGCTACTTTGTCATCTATGTTAGAGAAGGTTACTACGAAGAGTACGTCGTCGTCCCCAAATACAAAATGAACGTGATGCTCATCGGCGATGGCATTAACCGAACCGTCATCACCGGAAACCACAACGTCGTTGATGGTTGGACGACTTATAATTCTTCTACCGTCACTGTTTGTGGGGATGGATTTGTAGCAATCGATGTGACATTCAGGAACACAGCGGGGCCAGAGAAGCACCAAGCAGTGGCTTTAAGGAACAGTGCAGATCTCTCAACATTCTACCGTTGCAGCTTCGAGGGCTATCAAGACACGCTCTACGCACATTCCCTGAGACAATTCTACCGAGAATGCGACATTTACGGCACAGTCGACTTCATCTTCGGCAACGCAGCAGCAGTTTTCCAAAAATGCAATCTATACGCCAGAAAGCCACTCCCCAACCAAAAGATCGCGTTCACAGCACAAGGCCGAACCGATCCAAATCAAAACACAGGCATCTCAATCCACAACTGCACGATCAAGGCTGCCCCGGAGTGGGAGATGGAGTACTTGAACTCGACAACGACGAACTACCTGGGGCGGCCGTGGAAGCAGTACTCGAGGACGGTGTATATGCAGTCTTACATTGGGGATTTGATCAGCCCTGTGGGGTGGCTGGAGTGGAATGGAACAACAGGTTTGGACACTTTGTATTATGGTGAGTTTGAGAATTATGGGGCAGGAGCCAATACAAGCTTGAGGGTGGATTGGCCTGGCTTTAGCTTGATGAATATTACTCAGGCTATGAATTTTACTGTCTATAATTTTACTATGGGAGATACTTGGCTGCCTTATACTGATATTCCCTTTGCTGGTGGTTTGGTATGA 1782 50.11 MESYLTTIIYSPGPLYKPCPVLHSPSHIRVTEKTMNSVPFIFLLILSLHLAGASNPPPPPSTAACKSTLYPKLCRSIISSTRFSPSDPYGYGKFSIKQCLKQAIKMSTIIADYLHKKADSRLNRALEDCRDLSDSNIEFLGSIRDALQTAEDLDEELVERIESILSAIVTNGQTCVDGLVESRSDLVESMHGVGEMYSVSLGLVRDSLSRRWKKRRRNGGSGGGRRRFPVRARSREALNALIKGLHKMGSCNNSTLCSGRKRLLTDLGTTGIFISDTVVVSSTGLDNFTSIGDAISFAPNNSMPEDGYFVIYVREGYYEEYVVVPKYKMNVMLIGDGINRTVITGNHNVVDGWTTYNSSTVTVCGDGFVAIDVTFRNTAGPEKHQAVALRNSADLSTFYRCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAAVFQKCNLYARKPLPNQKIAFTAQGRTDPNQNTGISIHNCTIKAAPEWEMEYLNSTTTNYLGRPWKQYSRTVYMQSYIGDLISPVGWLEWNGTTGLDTLYYGEFENYGAGANTSLRVDWPGFSLMNITQAMNFTVYNFTMGDTWLPYTDIPFAGGLV 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 37136117 37144894 + Sed0024904.1 Sed07g2158 721022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2158 593 Gene3D - 272 592 IPR012334 -
Sed07g2158 593 SUPERFAMILY Pectin lyase-like 273 590 IPR011050 -
Sed07g2158 593 NCBIfam pectinesterase inhibitor domain 37 203 IPR006501 GO:0004857(InterPro)
Sed07g2158 593 PANTHER PECTINESTERASE 42 582 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed07g2158 593 SMART PMEI_2 56 203 IPR006501 GO:0004857(InterPro)
Sed07g2158 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 205 IPR035513 -
Sed07g2158 593 FunFam Pectinesterase 273 592 - -
Sed07g2158 593 Pfam Pectinesterase 278 578 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed07g2158 593 Pfam Plant invertase/pectin methylesterase inhibitor 63 202 IPR006501 GO:0004857(InterPro)
Sed07g2158 593 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Sed07g2158 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 206 IPR035513 -
Sed07g2158 593 CDD PMEI-like_3 63 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2158 Sed-Chr7:37136117 Sed13g1545 Sed-Chr13:20633207 1.60E-129 dispersed
Sed07g2158 Sed-Chr7:37136117 Sed13g0067 Sed-Chr13:393264 3.00E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2158 K01051 - csv:101206112 920.998