Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2172 ATGGTGGTGTCTGCAACTTTTGGCGACGAATTTCTGAGACAAAGAGCGGTGAAAATGAGAGAATCGCTGCAAAAGAGCCAAACCATTACCGATGATGTCATCTCGATTCTTGGCTCCTTTGATCACCGTCTCTCCGCTCTCGAAACCGCCATGCGCCCCACTCAGATTAGAACCAATTCTATTCGTAAAGCTCATGAGAATATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCCCAATTTGATCTCTCTCGTCAGGCAGAAATGAAAATACTTAAAGGGCCACATGAGGATTTGGAGAGTTATCTCGGGGCAATTGGTCAATTAAGAAACATTATTAAATTCTTTAGCAGCCATAAAGGTTTTAAGAGTAGTGAGGTAGTGCTTAACCAGGCAAATAATCTGCTTGCGAAAGCCATCTTGAAGCTTGAAGATGAGTTCAGACAGCTACTATCTTCCTACAGCAAACCTGTGGAGCCCGAGCGTCTTTTTGATTGCCTCCCAAAGTCAATGCAACCATCAACAGACTCTTCTGGTCAACAAGATGATTTAGGTGGAAAGAATCCCTCCTCTAATCATCATGCTGCACATCATGATATTAACTTGGAGACTGCTGACTTTACACCTCCCACTCTCATACCACCACGTGTTCTACCACTGCTCCACAATTTATCACAGCAGATGGTTCAAGCTGGTCATCAACAGAAAATTCTAGAAGTCTACAGGGATACCCGTTCAGTCGTTTTGGAAGAAAGCCTACTGAAATTGGGAGTTGAAAAGCTTAGCAAAGATGATGTCCAAAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAGCTGGATTCATTTTATGCGGATTGCAGTCAAACTACTGTTTGCTGGAGAACAAAAAGTGTGCGATAAGATATTTGAAGGCTTTGAATCGCTTAGAGATCAATCCTTTGCCGAGGTCACAAGTAGTAGTGTGTCTATGCTATTCAGTTTTGGGGAGGCAATTGCTAAAAGCAAAAGGTCACCAGAAAAGTTGTTCGTACTTTTGGATATGTATGAAATAATGCGAGAGCTTCACTCGGAGTTTGAGACAATTTTTAAGGGTAAAGCGTGCAACCAGATCAGAGAATCTGCATCAGGTTTGACCAAACGGCTTGCACAGACAGCTAAGGAGACATTTGGTGATTTTGAGGAAGCTGTTGAAAAAGATGCCACAAAAACTGCGGTGTTGGGTGGAACTGTCCATCCTTTGACAAGCTATGTGATTAATTATGTCAAATTTCTTTTTGACTATCAAGCAACCTTGAAGCAGCTTTTCCAAGAATTTGAAGATAGTGGTCAAATGGGTTCGGAATTGGCCTCTGTCACAATGCAAATAATGCAGGCCCTTCAATCTAATTTGGACGGAAAATCTAAGCATTACAGAGATCCTGCTTTGACCCACTTATTCCTCATGAACAACATCCATTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGAGACGACTGGGTTCAGAGACATAGGAGAGTTGTACAACAACATGCAAATCAGTATAAAAGGAATGCTTGGTCAAAGATTCTGCGATCTCTATCTGTTCAAGGGTTAACTTCATCTGGTGGTGGCAGTGTACCTGGTATAGATGGAGGAAACAGTAGTGGAGTTTCTAGGACACTTATTATAGACAGGTTCAAGATTTTCAACATGCAGTTTGAGGATCTGCATCAAAGACAGTCTCAATGGACCGTTCCCGACGCTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCGTTCCTAAAACGCTTTGGGCCGCTAATTGATGGTGGAAAGAATCCCCAAAAATACGTCAGATACCAACCAGAGGATCTCGAAAGGATGCTCGGAGAGTTTTTCGAGGGGAAGAACTTGGGCGAACCTAAGAGGTAG 1962 42.66 MVVSATFGDEFLRQRAVKMRESLQKSQTITDDVISILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAEMKILKGPHEDLESYLGAIGQLRNIIKFFSSHKGFKSSEVVLNQANNLLAKAILKLEDEFRQLLSSYSKPVEPERLFDCLPKSMQPSTDSSGQQDDLGGKNPSSNHHAAHHDINLETADFTPPTLIPPRVLPLLHNLSQQMVQAGHQQKILEVYRDTRSVVLEESLLKLGVEKLSKDDVQKMAWEVLEAKIGSWIHFMRIAVKLLFAGEQKVCDKIFEGFESLRDQSFAEVTSSSVSMLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEFETIFKGKACNQIRESASGLTKRLAQTAKETFGDFEEAVEKDATKTAVLGGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQMGSELASVTMQIMQALQSNLDGKSKHYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRNAWSKILRSLSVQGLTSSGGGSVPGIDGGNSSGVSRTLIIDRFKIFNMQFEDLHQRQSQWTVPDAELRESLRLSVAEVLLPAYRSFLKRFGPLIDGGKNPQKYVRYQPEDLERMLGEFFEGKNLGEPKR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 37253760 37262829 + Sed0005454.1 Sed07g2172 721036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2172 653 Pfam Exo70 exocyst complex subunit C-terminal 281 640 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed07g2172 653 Gene3D Exocyst complex component Exo70 76 653 - -
Sed07g2172 653 MobiDBLite consensus disorder prediction 171 189 - -
Sed07g2172 653 PANTHER EXOCYST COMPLEX PROTEIN EXO70 16 646 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed07g2172 653 MobiDBLite consensus disorder prediction 168 196 - -
Sed07g2172 653 SUPERFAMILY Cullin repeat-like 78 644 IPR016159 -
Sed07g2172 653 Pfam Exocyst complex component Exo70 N-terminal 71 153 - -
Sed07g2172 653 Coils Coil 130 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1298 Sed-Chr1:9706791 Sed07g2172 Sed-Chr7:37253760 4.60E-61 dispersed
Sed07g2172 Sed-Chr7:37253760 Sed14g0271 Sed-Chr14:2835407 8.20E-257 dispersed
Sed06g1977 Sed-Chr6:43901210 Sed07g2172 Sed-Chr7:37253760 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2172 K07195 - csv:101206262 1126.69