Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2204 ATGGAGCAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGGGTGGTTTATAAGGCACGCGACCGCGTTACGAATGAGACTATTGCTTTGAAGAAGATCCGCTTGGAGCAGGAAGATGAGGGAGTGCCGAGTACAGCCATTCGCGAAATTTCACTTTTGAAGGAAATGCAACATGGCAACATTGTAAGGTTACAAGATGTTGTGCATAGTGAGAAGCGCCTATATCTTGTTTTTGAGTATCTCGATTTGGATTTGAAGAAGCACATGGACTCCTCTCCTGAATTTGCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTACCAAATTCTTCGTGGCATTGCATATTGTCATTCTCATAGAGTTCTTCATCGAGATCTAAAACCCCAAAATCTACTCATAGACCGTCGCACCAATGCACTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGCATTCCTGTTAGAACATTCACGCATGAGGTGGTGACGCTTTGGTACAGAGCACCAGAAATCTTACTTGGTTCCCGACATTATTCCACTCCCGTGGATGTTTGGTCAGTGGGTTGTATATTTGCTGAGATGGTTAACCAGCGGCCATTATTCCCTGGGGACTCTGAGATTGATGAATTGTTCAAGATATTTAGAGTTTTGGGAACTCCGAATGAAGATACGTGGCCTGGTGTTACGTCTTTGCCCGATTTTAAGTCTGCTTTCCCCAAGTGGCCTTCCAAGGACTTGGCTTCTGTAGTTCCAAATCTTGAATCCGCCGGCATTGAACTTCTCTCTAAAATGCTGTGCTTGGATCCCACCAAAAGAGTCACGGCCAGGAATGCCCTTGAGCATGAATACTTCAAAGATGTGGGGTTTGTTCCCTGA 885 44.63 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKDLASVVPNLESAGIELLSKMLCLDPTKRVTARNALEHEYFKDVGFVP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 37762748 37769393 - Sed0003801.2 Sed07g2204 721068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2204 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Sed07g2204 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2204 294 PANTHER CELL DIVISION PROTEIN KINASE 3 287 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)|GO:0051445(PANTHER)
Sed07g2204 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Sed07g2204 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2204 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Sed07g2204 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2204 294 FunFam Cell division control protein 2 1 84 - -
Sed07g2204 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Sed07g2204 294 FunFam Cell division control protein 2 homolog 86 292 - -
Sed07g2204 294 SMART serkin_6 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2204 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0897 Sed-Chr4:8100141 Sed07g2204 Sed-Chr7:37762748 3.70E-58 dispersed
Sed06g1993 Sed-Chr6:43997911 Sed07g2204 Sed-Chr7:37762748 2.90E-169 dispersed
Sed07g2204 Sed-Chr7:37762748 Sed14g0538 Sed-Chr14:5418258 6.20E-95 dispersed
Sed07g2203 Sed-Chr7:37762748 Sed07g2204 Sed-Chr7:37762748 4.80E-172 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79555 PF00069 Pkinase 9.40E-81 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2204 K02206 - csv:101217311 586.645