Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2218 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAGAATCAGGATGGTGATTCTAATAATGGCGGCAATGCTTTGAGATCTAAGAGCTTTGCGTTTCGGGCTCCTCAGGAGAATTTTACTGTCCAGGATTTTGAATTGGGAAAGATTTATGGCGTTGGTTCTTATTCCAAGGTTGTGAGGGCAAAGAAGAAGGACACAGGAATTATATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCGTTGGAGTCCTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGACGAAGCTCGATTCTATGCTGCAGAAGTCGTCGATGCTCTTGAATACATACACAACATGGGATTGATACACCGTGATATCAAGCCTGAAAACTTGCTGATTACTACCGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTGGACAGTCAAATTACCGTTCTCCCAAATGCAGCATCAGATGATAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTCGGAAATGACCTTTGGGCCCTTGGGTGCACCTTGTATCAGATGCTTTCGGGGACTTCTCCTTTTAAGGATGCAAGTGAATGGCTTATTTTCCAAAAAATTGTAGCACGAGACATAAAATTCCCCAGCTATTTTTCAGAGCAAGCCAGGGATCTCATTGACCACCTACTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCCGAGGGTTATGCTTCTCTCAAGAGTCATCCCTTCTTTGAGGGGATTGATTGGAAGAACATAAGAGCACAAACCCCACCCAAGCTTGCTTTAGAAGCAGTGCCTCGTTCCAATCAGACCGATGATAGCTCCGAGTCCTCTTGGAATCCTTCACACATCGGAGATGGTGCACCAAGACAAAACGATGGGAATGCTGGTTCTGCATCAACTTCCGAAGGATCACATCACATTACTCGGCTTGCATCGATAGACTCTTTCGATTCAAAATGGCAACAATTCCTTGAACCCGGAGAATCTGTTCTTATGATTTCAATGGTGAAAAAGCTTCAGAAAATAACAAGCAAAAAGGTTCAGCTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAGCATCATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCAAAAAAGATTGCCTCTTTCGAGGATGCGAAGCAGCGAGCATGGCAATGGAAGAAGGCGATCGAGGGGCTTCAGAACCGGTGA 1479 43.14 MLAMEKDFDAKLMIQNQDGDSNNGGNALRSKSFAFRAPQENFTVQDFELGKIYGVGSYSKVVRAKKKDTGIIYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYAAEVVDALEYIHNMGLIHRDIKPENLLITTDGHIKIADFGSVKPMVDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYASLKSHPFFEGIDWKNIRAQTPPKLALEAVPRSNQTDDSSESSWNPSHIGDGAPRQNDGNAGSASTSEGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKITSKKVQLILTNKPKLIYVDPSKLIVKGSIIWSDNPNDLNIQVTSPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNR 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38058642 38064826 - Sed0021073.1 Sed07g2218 721082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2218 492 FunFam 3-phosphoinositide-dependent protein kinase 2-like 131 329 - -
Sed07g2218 492 Pfam Protein kinase domain 48 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2218 492 SUPERFAMILY PH domain-like 308 491 - -
Sed07g2218 492 MobiDBLite consensus disorder prediction 334 375 - -
Sed07g2218 492 Gene3D Phosphorylase Kinase; domain 1 45 130 - -
Sed07g2218 492 FunFam 3-phosphoinositide-dependent protein kinase 1 362 492 - -
Sed07g2218 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2218 492 SMART serkin_6 47 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2218 492 Gene3D - 361 492 IPR011993 -
Sed07g2218 492 SUPERFAMILY Protein kinase-like (PK-like) 44 375 IPR011009 -
Sed07g2218 492 Gene3D Transferase(Phosphotransferase) domain 1 131 327 - -
Sed07g2218 492 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2218 492 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 342 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed07g2218 492 Pfam PH domain 389 491 IPR033931 -
Sed07g2218 492 Coils Coil 472 492 - -
Sed07g2218 492 FunFam 3-phosphoinositide-dependent protein kinase 2-like 45 130 - -
Sed07g2218 492 CDD STKc_PDK1 45 314 IPR039046 GO:0004674(InterPro)
Sed07g2218 492 MobiDBLite consensus disorder prediction 337 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2005 Sed-Chr6:44140505 Sed07g2218 Sed-Chr7:38058642 5.10E-259 dispersed
Sed07g2218 Sed-Chr7:38058642 Sed08g0180 Sed-Chr8:1003832 6.20E-55 dispersed
Sed08g2147 Sed-Chr8:35387286 Sed07g2218 Sed-Chr7:38058642 2.80E-06 dispersed
Sed07g2218 Sed-Chr7:38058642 Sed07g2219 Sed-Chr7:38058642 4.40E-194 tandem
Sed06g2004 Sed-Chr6:44140505 Sed07g2218 Sed-Chr7:38058642 5.10E-259 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79556 PF00069 Pkinase 2.60E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2218 K06276 - csv:101212874 908.672