Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2219 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAGAATCAGGATGGTGATTCTAATAATGGCGGCAATGCTTTGAGATCTAAGAGCTTTGCGTTTCGGGCTCCTCAGGAGAATTTTACTGTCCAGGATTTTGAATTGGGAAAGATTTATGGCGTTGGTTCTTATTCCAAGGTTGTGAGGGCAAAGAAGAAGGACACAGGAATTATATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCGTTGGAGTCCTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGACGAAGCTCGATTCTATGCTGCAGAAGTCGTCGATGCTCTTGAATACATACACAACATGGGATTGATACACCGTGATATCAAGCCTGAAAACTTGCTGATTACTACCGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTGGACAGTCAAATTACCGTTCTCCCAAATGCAGCATCAGATGATAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTCGGAAATGACCTTTGGGCCCTTGGGTGCACCTTGTATCAGATGCTTTCGGGGACTTCTCCTTTTAAGGATGCAAGTGAATGGCTTATTTTCCAAAAAATTGTAGCACGAGACATAAAATTCCCCAGCTATTTTTCAGAGCAAGCCAGGGATCTCATTGACCACCTACTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCCGAGGGTTATGCTTCTCTCAAGAGTCATCCCTTCTTTGAGGGGATTGATTGGAAGAACATAAGAGCACAAACCCCACCCAAGCTTGCTTTAGAAGCAGTGGTATTGTTTGCTAACAAAAGTGCTATGTATCATTTACTTGATCCATGTGTTCTTGCCGAAAACAGTATCTTGCTTTTGTTTATGTAG 1092 41.85 MLAMEKDFDAKLMIQNQDGDSNNGGNALRSKSFAFRAPQENFTVQDFELGKIYGVGSYSKVVRAKKKDTGIIYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYAAEVVDALEYIHNMGLIHRDIKPENLLITTDGHIKIADFGSVKPMVDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYASLKSHPFFEGIDWKNIRAQTPPKLALEAVVLFANKSAMYHLLDPCVLAENSILLLFM 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38058642 38064826 - Sed0021073.2 Sed07g2219 721083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2219 363 FunFam 3-phosphoinositide-dependent protein kinase 2-like 45 130 - -
Sed07g2219 363 Gene3D Phosphorylase Kinase; domain 1 45 130 - -
Sed07g2219 363 Gene3D Transferase(Phosphotransferase) domain 1 131 326 - -
Sed07g2219 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2219 363 SMART serkin_6 47 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2219 363 SUPERFAMILY Protein kinase-like (PK-like) 33 335 IPR011009 -
Sed07g2219 363 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2219 363 FunFam 3-phosphoinositide-dependent protein kinase 2-like 131 329 - -
Sed07g2219 363 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 328 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed07g2219 363 Pfam Protein kinase domain 48 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2219 363 CDD STKc_PDK1 45 314 IPR039046 GO:0004674(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2004 Sed-Chr6:44140505 Sed07g2219 Sed-Chr7:38058642 2.70E-183 dispersed
Sed07g2219 Sed-Chr7:38058642 Sed08g0180 Sed-Chr8:1003832 7.80E-55 dispersed
Sed07g2218 Sed-Chr7:38058642 Sed07g2219 Sed-Chr7:38058642 4.40E-194 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79557 PF00069 Pkinase 1.10E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2219 K06276 - csv:101212874 616.69