Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2219 | ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAGAATCAGGATGGTGATTCTAATAATGGCGGCAATGCTTTGAGATCTAAGAGCTTTGCGTTTCGGGCTCCTCAGGAGAATTTTACTGTCCAGGATTTTGAATTGGGAAAGATTTATGGCGTTGGTTCTTATTCCAAGGTTGTGAGGGCAAAGAAGAAGGACACAGGAATTATATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCGTTGGAGTCCTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGACGAAGCTCGATTCTATGCTGCAGAAGTCGTCGATGCTCTTGAATACATACACAACATGGGATTGATACACCGTGATATCAAGCCTGAAAACTTGCTGATTACTACCGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTGGACAGTCAAATTACCGTTCTCCCAAATGCAGCATCAGATGATAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTCGGAAATGACCTTTGGGCCCTTGGGTGCACCTTGTATCAGATGCTTTCGGGGACTTCTCCTTTTAAGGATGCAAGTGAATGGCTTATTTTCCAAAAAATTGTAGCACGAGACATAAAATTCCCCAGCTATTTTTCAGAGCAAGCCAGGGATCTCATTGACCACCTACTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCCGAGGGTTATGCTTCTCTCAAGAGTCATCCCTTCTTTGAGGGGATTGATTGGAAGAACATAAGAGCACAAACCCCACCCAAGCTTGCTTTAGAAGCAGTGGTATTGTTTGCTAACAAAAGTGCTATGTATCATTTACTTGATCCATGTGTTCTTGCCGAAAACAGTATCTTGCTTTTGTTTATGTAG | 1092 | 41.85 | MLAMEKDFDAKLMIQNQDGDSNNGGNALRSKSFAFRAPQENFTVQDFELGKIYGVGSYSKVVRAKKKDTGIIYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYAAEVVDALEYIHNMGLIHRDIKPENLLITTDGHIKIADFGSVKPMVDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYASLKSHPFFEGIDWKNIRAQTPPKLALEAVVLFANKSAMYHLLDPCVLAENSILLLFM | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 38058642 | 38064826 | - | Sed0021073.2 | Sed07g2219 | 721083 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2219 | 363 | FunFam | 3-phosphoinositide-dependent protein kinase 2-like | 45 | 130 | - | - | |
Sed07g2219 | 363 | Gene3D | Phosphorylase Kinase; domain 1 | 45 | 130 | - | - | |
Sed07g2219 | 363 | Gene3D | Transferase(Phosphotransferase) domain 1 | 131 | 326 | - | - | |
Sed07g2219 | 363 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 166 | 178 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed07g2219 | 363 | SMART | serkin_6 | 47 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g2219 | 363 | SUPERFAMILY | Protein kinase-like (PK-like) | 33 | 335 | IPR011009 | - | |
Sed07g2219 | 363 | ProSiteProfiles | Protein kinase domain profile. | 47 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g2219 | 363 | FunFam | 3-phosphoinositide-dependent protein kinase 2-like | 131 | 329 | - | - | |
Sed07g2219 | 363 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 25 | 328 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Sed07g2219 | 363 | Pfam | Protein kinase domain | 48 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g2219 | 363 | CDD | STKc_PDK1 | 45 | 314 | IPR039046 | GO:0004674(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g2004 | Sed-Chr6:44140505 | Sed07g2219 | Sed-Chr7:38058642 | 2.70E-183 | dispersed | |
Sed07g2219 | Sed-Chr7:38058642 | Sed08g0180 | Sed-Chr8:1003832 | 7.80E-55 | dispersed | |
Sed07g2218 | Sed-Chr7:38058642 | Sed07g2219 | Sed-Chr7:38058642 | 4.40E-194 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79557 | PF00069 | Pkinase | 1.10E-66 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2219 | K06276 | - | csv:101212874 | 616.69 |