Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2222 ATGAATTCTCTCCAAAACCTTTCGATATCGTCTTCTTTGCCGCTGCGAAGCTTCAAATGCCGACAGAAGCTTGAATTTCAGCTCTCCAAACTGGTGGTAAGGAACTTTTCCGATCTACATCGACGTTCTTCCGTGAAGGTCGTATATAGCTCTACCTCAAGTGCCGAAATGAGTGGCGCGGAAGTGGACGATGCCGAGGAGGAGGAAAAATCTGAGATATATAGCCATAACATGACAGAAGCTATGGGTGCTGTACTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTAGTCCAGATTTAATTGTAGGATCGTGCCTTCAGACTCCAGAAGATGTTGACAAGCTCCGCAGCATTGGAGTAAAAACAATTTTCTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACGTTTGATGATATCGAACATGTGCGAGCTCAAATAAGGGATTTTGATGCATTCGACCTACGGCTAAGATTACCAGCTGTTGTAAGCAAATTACATAAAGCCATAAACCGAAATGGTGGAGTGGCTTACATTCATTGTACTGCTGGACTTGGAAGAGCACCTGCTGTTGCGCTGGCCTATATGTTTTGGGTTCAAGGCTACAAACTCAATGAGGCTGTAGAATTACTGCTGAGCAAACGCTCATGCTTCCCAAAAATTGATGCTATTAAAAATGCAACGGCTGATATTTTCTCAGGATTTAAAAAGAAGCATGTTACTTTATCTTGGAAAGATGGGCAACGCTCAACTGTGGAAGTATCGGGACTTGATATTGGATGGGGCCAGAGGATTCCTTTAAAATTCGACAAGGAACGAGGTGAATGGGTTCTCAAAAGGGAATTGGCGGAAGGACGATATGAATACAAGTATATTATTGATGGTGTATGGATGTGCAACCAAAACGGGCCCCTCACTACAATCAACAAAGATGGCCACATCAACAATTTCATTGAGGTTGTTGACGATGATGATCCAAGTAGTGATCGGGCAATTCTTCGGGGGAGATTAACTGGAGATGACCCAGAACTCACAAAGGAAGAAAAAAGCAAAATAAGACAATTTCTTGAAGCTTTCCCAGATGATGAAAACTGA 1140 42.28 MNSLQNLSISSSLPLRSFKCRQKLEFQLSKLVVRNFSDLHRRSSVKVVYSSTSSAEMSGAEVDDAEEEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFISPDLIVGSCLQTPEDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHVRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVALAYMFWVQGYKLNEAVELLLSKRSCFPKIDAIKNATADIFSGFKKKHVTLSWKDGQRSTVEVSGLDIGWGQRIPLKFDKERGEWVLKRELAEGRYEYKYIIDGVWMCNQNGPLTTINKDGHINNFIEVVDDDDPSSDRAILRGRLTGDDPELTKEEKSKIRQFLEAFPDDEN 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38100102 38108999 + Sed0016850.2 Sed07g2222 721086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2222 379 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 172 230 IPR000387 GO:0016311(InterPro)
Sed07g2222 379 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 4 377 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Sed07g2222 379 Pfam Glycogen recognition site of AMP-activated protein kinase 255 339 IPR032640 -
Sed07g2222 379 Gene3D Immunoglobulins 250 342 IPR013783 -
Sed07g2222 379 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 250 340 - -
Sed07g2222 379 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 92 236 IPR029021 -
Sed07g2222 379 Pfam Dual specificity phosphatase, catalytic domain 151 233 IPR000340 GO:0016311(InterPro)
Sed07g2222 379 Gene3D Protein tyrosine phosphatase superfamily 88 370 IPR029021 -
Sed07g2222 379 SUPERFAMILY E set domains 253 336 IPR014756 -
Sed07g2222 379 SMART dsp_5 95 241 IPR020422 GO:0006470(InterPro)
Sed07g2222 379 CDD DSP_laforin-like 94 241 IPR045204 GO:0019203(InterPro)
Sed07g2222 379 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 88 268 - -
Sed07g2222 379 ProSiteProfiles Dual specificity protein phosphatase domain profile. 95 252 IPR020422 GO:0006470(InterPro)
Sed07g2222 379 CDD E_set_AMPKbeta_like_N 255 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0349 Sed-Chr4:2570234 Sed07g2222 Sed-Chr7:38100102 8.00E-39 dispersed
Sed06g2006 Sed-Chr6:44156099 Sed07g2222 Sed-Chr7:38100102 6.30E-188 dispersed
Sed07g2221 Sed-Chr7:38100102 Sed07g2222 Sed-Chr7:38100102 6.10E-220 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2222 - - - 0.0