Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2239 ATGGAGGCCTCTCCAACTCAATTCAACACGAAAACCTTCACGATCCAAGTGATCAAAGGGTCATGGTTCTTAATGTTCGCCTCGTTCCTAATCATGTCGATGGCCGGGATCCCGTACATGTTCGGGCTATACTCGGGCACGATAAAATCCGTATTAGGCTACGACCAAACCACCCTAAACTTCATAAGCTTCTTCAAAGACGTCGGGACCACGGTCGGCATCCTGGCGGGACTAATCAACGAGGTGCTGCCACCATGGTCGATCCTCGCGATGGGGGCAGTCCTCAACTTCCTCGGCTACTTCATGATATGGCTCTCCGTGTCGAGCAAGATCCCGACCCACGTGTGGCTCATGTGCCTTTACATCTGCATCGGCGCCAACGCGACGACCTTCGCCAACACGGGCGCCCTCGTCACGTGCGTCAAGAACTACCCGCAGCGACGCGGGGTCGTGATCGGGATCCTCAAGGGCTACATGGGGTTGAGCGGGGCCATCGTGACGCAGCTCTACCATGCAATATATGGTAACGATGCTAAGTCGTTGATTTTGTTGTTGGGGTGGTTGCCGGCCGCGGTGTCGTTCGTGTTCTTGCCGACGGTGCGGCGGATGAAGGTCGAGCACGAGGCCGATGAGCTGAAGGTTTTTTATAGGTTCTTGTGGATCTCTTTGGGGCTGGCTGGGTTTCTTATGGTGATGATTATTTTGCAACAGAAGTTTACTTTTAGCCGGCCGGAGTACGGAGGAAGTGCGGCGGTGGTTACTTTTTTGCTGCTGTTGCCTCTCGCCATCGTAGTCGCGCAGGAGTTTAAGGCGTGGCGGCGGTTGAATAAGCCGGTGGCTGTCGAGAACGGTGTCTCTTCTACGGGGTCACCACCATTGAAGAACACAACACCAATGACACTTCTTCCTAACAAACCAAAGCTCCAACAAGAAACCACCAAAGTAGAATGGTGGAAAGACGTTTTTAACCCTCCAAAACGAGGTGATGACTGGACCATCCTCCAAGCCCTATTCAGTGTGGACATGCTCCTCCTCTTCCTCGCCACAGCCTGCGGTGTCGGTGGAACCCTAACCGCCATCGACAACCTCGGCCAAATCGGAGACTCCCTCAACTACCCCAAGAAAAGCATCAGCACCTTCGTCTCCCTCGTCAGCATTTGGAACTACCTCGGGCGCGTCATGGCCGGGTTCCTCTCCGAACACTTACTCATCAAGTACAAATTTCCCCGCCCCCTCATGCTCACATTCGTCCTCTTCTTGTCCTGCGTCGCGCATCTCCTCTTCGCCTTCGGCCCCTCGGGAGGCCTCTACATTGCCTCCGTCCTCACCGGCTTTTGCTACGGTGCCCAATGGCCTCTCCTTTTCGCCATCATCTCTGAGGTCTTTGGCCTCAAGTACTACGCCACGCTCTATAACTTTGGCTCCGTCGCGAGCCCTATCGGGCTTTACGTGCTGAATGTGAATGTCGCCGGGTATTTGTACGACAAGGAGGCGAAAAAACAGCTCGCTGCGGCCGGGTTGGTGAGGAAGGTTGGAGAGGAGTTGAATTGCAATGGGGTTGTTTGTTTTAAGATGTCATTTATTATTATTACGGCTGTGAGTGTGTTTGGGGCTTTGGTGTCTTTGATTTTGGTGTGGAGGACGAGGAAGTTTTATAAGAGTGATATCTATAGAAGGTACAGAGAGGCCGAGGAGGAGGCGGCGATTGCGGCGGAGGAGGACGAGGGTTTTCCGAGGGAGACGAAGAATGGGCTTAAGCAATGA 1764 53.68 MEASPTQFNTKTFTIQVIKGSWFLMFASFLIMSMAGIPYMFGLYSGTIKSVLGYDQTTLNFISFFKDVGTTVGILAGLINEVLPPWSILAMGAVLNFLGYFMIWLSVSSKIPTHVWLMCLYICIGANATTFANTGALVTCVKNYPQRRGVVIGILKGYMGLSGAIVTQLYHAIYGNDAKSLILLLGWLPAAVSFVFLPTVRRMKVEHEADELKVFYRFLWISLGLAGFLMVMIILQQKFTFSRPEYGGSAAVVTFLLLLPLAIVVAQEFKAWRRLNKPVAVENGVSSTGSPPLKNTTPMTLLPNKPKLQQETTKVEWWKDVFNPPKRGDDWTILQALFSVDMLLLFLATACGVGGTLTAIDNLGQIGDSLNYPKKSISTFVSLVSIWNYLGRVMAGFLSEHLLIKYKFPRPLMLTFVLFLSCVAHLLFAFGPSGGLYIASVLTGFCYGAQWPLLFAIISEVFGLKYYATLYNFGSVASPIGLYVLNVNVAGYLYDKEAKKQLAAAGLVRKVGEELNCNGVVCFKMSFIIITAVSVFGALVSLILVWRTRKFYKSDIYRRYREAEEEAAIAAEEDEGFPRETKNGLKQ 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38326758 38329960 + Sed0001594.1 Sed07g2239 721103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2239 587 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 21 560 - GO:0016020(PANTHER)
Sed07g2239 587 Pfam Nodulin-like 22 265 IPR010658 -
Sed07g2239 587 Coils Coil 553 573 - -
Sed07g2239 587 SUPERFAMILY MFS general substrate transporter 222 552 IPR036259 -
Sed07g2239 587 Pfam Major Facilitator Superfamily 346 550 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Sed07g2239 587 CDD MFS_Mch1p_like 22 538 - -
Sed07g2239 587 Gene3D MFS general substrate transporter like domains 335 584 IPR036259 -
Sed07g2239 587 SUPERFAMILY MFS general substrate transporter 21 207 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2239 Sed-Chr7:38326758 Sed11g1188 Sed-Chr11:27731790 4.80E-139 dispersed
Sed01g2884 Sed-Chr1:24515583 Sed07g2239 Sed-Chr7:38326758 2.00E-209 wgd
Sed06g2020 Sed-Chr6:44310356 Sed07g2239 Sed-Chr7:38326758 1.70E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2239 - - - 0.0