Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2256 ATGGCTCCCAATCACGAAAATGGCAACGGCGCCGCCGCGTACGGCGGCTGTAACGGCAACGGAATTGGTAACGGCCAGTTTTGTTTGGACCCGCTCCGGTGGGGGGCGGCGGCAGAGGGGATGAAGGGGAGTCATTTGGATGAGGTGATAAGGATGGTGGAGGAGTACCGGAAGCCGGTGGTCCGGCTCGGCGGAGAGGGGTTGACGGTGGGTCAGGTCGCCGCCATTGCCGGCGGGGATGTGAGGGTGGAGCTGGCGGAGGAGAGCCGGGTTCGGGTGAAGGCGAGTAGCGATTGGGTGATGGATAGTATGAACAAAGGAACTGATAGTTATGGTGTCACGACCGGGTTTGGTGCAACTTCTCATAGACGAACCAAACAAGGTGGAGCTCTTCAAAGAGAACTTATTAGGTTTTTAAATGCTGGAATCTTCGGCGCCGGTACCGAATCTTCTCACAAACTGCCACCGACGGCAACCCGAGCTGCCATGTTGGTGAGAATCAACACTCTTTTACAAGGCTATTCAGGCATAAGGTTTGAGATTTTGGAAGCCCTAACCAAGTTTCTAAACCATGAGATTACTCCATGTTTGCCTCTAAGAGGAACCATAACTGCATCTGGTGATTTGGTTCCTCTTTCATACATTGCTGGGCTTTTGATTGGAAGGCCCAATTCCAAGGCTGTTGGGCCAAATGGAGAGCTCATTAACCCATCTAAAGCCTTTGAGCTAGCTGGAATTGATGGTGGGTTTTTTGAGTTGCAACCCAAAGAAGGTCTTGCCCTTGTGAATGGTACTGCTGTTGGATCTGGCTTAGCTTCTATGGTGCTTTTTGACGCCAACATTTTGGCTGTTTTTTCTGAAGTGTTGTCGGCTGTTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTTACCGATCATTTAACGCATAAATTAAAGCATCATCCTGGTCAGATTGAAGCTGCGGCTATAATGGAACATATATTGGATGGAAGTTCTTATGTGAAATCAGCTCAAAAGTTGCATGAGATTGATCCTTTGCAGAAGCCTAAACAGGATAGGTATGCTCTTAGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATTCGAGCTGCGACGAAGATGATCGAGAGGGAAATAAACTCGGTGAATGACAACCCATTGATTGATGTTTCGAGAAACAAGGCATTACATGGAGGAAATTTTCAGGGCACCCCAATTGGTGTCTCAATGGATAACACTAGGTTGGCCATCGCTTCTATTGGAAAGCTTATGTTTGCTCAATTTTCTGAACTTGTGAATGATTTTTATAACAATGGGTTGCCTTCCAATCTTTCGGCAAGTCGCCATCCTAGTTTGGATTATGGCTTCAAAGGAGCTGAAATTGCTATGGCGTCGTACTGTTCTGAACTTCAATTCTTAGCCAACCCTGTCACCAATCATGTTCAAAGTGCCGAGCAACATAACCAAGATGTGAACTCATTAGGATTGATTTCGTCGAGAAAAACAGAAGAGGCGGTTGAGATACTAAAGTTAATGTCCACTACTTTCTTGGTTGCCCTTTGCCAATCTATAGACTTGAGACACTTGGAAGAAAACTTGAAAAACACAGTAAAAAACACAATAAGTCAAGTATCAAAGAAAGTACTAACCATGGGGTATAATGGAGAGCTTCACCCAATTCGATTTAGTGAGAAACATTTGCTTCAAGTGGTCGATAGAGAGCATGTTTTCACTTACATCGATGATCCTTGTAGTGCTACTTATCCCTTAATGCAAAAGCTAAGACAAGTTCTAGTAGAACACGCTTTGAACAATGGCGAAAAGGAAGAAAATCTAAGCACTTCGATCTTTCATAAGATAGGAGCATTCGAGGAAGAACTTAAGGCCATCTTGTCTAAAGAAGTAGAAAATGCAAGATTTGAATTTGAGAACAAAAGTTCGACAATTTCAAACCAAATAAAAGAATGCAGATCTTATCCATTATACAAGTTTGTTAGAGAAACCTTGGAGACAAATTTACTAACAGGCGAGAAAGTCAAATCCCCTGGTGAAGAATTTGATAAGGTATTTTCAGCCATTTGCAATGGAAAATTGATTGATCCAATATTAGAATGCTTGAAAGGATGGAATGGTGCTCCCCTCCCCATCAATTAA 2160 43.89 MAPNHENGNGAAAYGGCNGNGIGNGQFCLDPLRWGAAAEGMKGSHLDEVIRMVEEYRKPVVRLGGEGLTVGQVAAIAGGDVRVELAEESRVRVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGAGTESSHKLPPTATRAAMLVRINTLLQGYSGIRFEILEALTKFLNHEITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAVGPNGELINPSKAFELAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFDANILAVFSEVLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRHPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSTTFLVALCQSIDLRHLEENLKNTVKNTISQVSKKVLTMGYNGELHPIRFSEKHLLQVVDREHVFTYIDDPCSATYPLMQKLRQVLVEHALNNGEKEENLSTSIFHKIGAFEEELKAILSKEVENARFEFENKSSTISNQIKECRSYPLYKFVRETLETNLLTGEKVKSPGEEFDKVFSAICNGKLIDPILECLKGWNGAPLPIN 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38456346 38461192 - Sed0013151.1 Sed07g2256 721120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2256 719 FunFam Phenylalanine ammonia-lyase 532 653 - -
Sed07g2256 719 NCBIfam phenylalanine ammonia-lyase 30 709 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed07g2256 719 SUPERFAMILY L-aspartase-like 30 718 IPR008948 GO:0003824(InterPro)
Sed07g2256 719 PANTHER HISTIDINE AMMONIA-LYASE 30 718 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Sed07g2256 719 CDD PAL-HAL 66 529 IPR001106 -
Sed07g2256 719 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 201 217 IPR022313 GO:0016841(InterPro)
Sed07g2256 719 Gene3D - 23 265 IPR024083 -
Sed07g2256 719 FunFam Phenylalanine ammonia-lyase 266 554 - -
Sed07g2256 719 FunFam Phenylalanine ammonia-lyase 23 265 - -
Sed07g2256 719 Pfam Aromatic amino acid lyase 68 545 IPR001106 -
Sed07g2256 719 Gene3D - 532 653 IPR023144 -
Sed07g2256 719 Gene3D Fumarase/aspartase (Central domain) 266 714 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2256 Sed-Chr7:38456346 Sed14g0399 Sed-Chr14:4116312 0.00E+00 dispersed
Sed07g2256 Sed-Chr7:38456346 Sed03g2015 Sed-Chr3:14065462 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2256 K10775 - rcu:8273543 1190.64