Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2268 ATGGCGAAAAACGACACGACGACGCGTGGCTTATCCGTCAAGGACTACAAGGACCCACCACCCGCGCCCTTGTTCGACGCGGTGGAGGTCCGAAAGTGGTCCTTCTACAGAGCCATCGTTGCTGAGTTTGTAGCCACTCTTCTCTTTCTGTATATCACTATCTTGACTGTGATGGGCTATAGTAGCCAGAGCGATCCCCACAGCACCGGCGCCGACGTTTGCAAAGGCGTTGGCATCCTCGGCATCGCTTGGAGCTTCGGTGGCATGATCTTCGTCCTCGTTTACTGCACTGCCGGCATTTCAGGCGGGCACATAAACCCGGCAGTAACATTCGGGCTGTTATTAGCGCGCAAGGTATCGTTGGTTCGGGCAGTGGCTTACATGGTGGCTCAATGTTTGGGAGCCGTGTGCGGAGCCGGGCTCGTAAAGTCCCTACAAAGAGACTACTTCAACAAGTATGGGGGCGGCGCGAACCAGCTCGCGCATGGCTACAGCATCGGGGCCGGCTTGGGAGCTGAGATTATCGGAACCTTCGTCTTGGTCTACACTGTCTTCTCCGCCACGGATAGCAAGAGAAAAGCTAGAGACTCTCATGTTCCTGTATTGGCTCCACTGTCAATTGGGTTTGCTGTGTTCATGGCTCATTTGGCTACAATCCCCATTACTGGTACCAGCATCAACCCTGCTAGAAGCTTTGGCCCTGCTGTTATCTTGAATAGGCAAAAACCTTGGGATGATCATTGGATATTTTGGGTTGGGCCTTTCATCGGAGCCGCCATTGCAGCCATCTACCATCAGTTCATTTTGAGGGCCGGCGGGAACAAGGCCCATGGCCCTTACAGGAGCAACCCTTCAGTTTGA 861 53.89 MAKNDTTTRGLSVKDYKDPPPAPLFDAVEVRKWSFYRAIVAEFVATLLFLYITILTVMGYSSQSDPHSTGADVCKGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVAYMVAQCLGAVCGAGLVKSLQRDYFNKYGGGANQLAHGYSIGAGLGAEIIGTFVLVYTVFSATDSKRKARDSHVPVLAPLSIGFAVFMAHLATIPITGTSINPARSFGPAVILNRQKPWDDHWIFWVGPFIGAAIAAIYHQFILRAGGNKAHGPYRSNPSV 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38529118 38534264 + Sed0015826.1 Sed07g2268 721132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2268 286 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2268 286 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2268 286 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2268 286 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2268 286 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2268 286 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2268 286 Pfam Major intrinsic protein 29 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2268 286 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Sed07g2268 286 FunFam Probable aquaporin PIP1-2 22 284 - -
Sed07g2268 286 Gene3D Glycerol uptake facilitator protein. 22 285 IPR023271 -
Sed07g2268 286 SUPERFAMILY Aquaporin-like 29 270 IPR023271 -
Sed07g2268 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 276 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Sed07g2268 286 CDD MIP 37 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2268 286 NCBIfam MIP family channel protein 41 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2268 Sed-Chr7:38529118 Sed14g0415 Sed-Chr14:4313852 3.60E-124 dispersed
Sed06g2041 Sed-Chr6:44490237 Sed07g2268 Sed-Chr7:38529118 1.80E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2268 K09872 - csv:101204956 502.286