Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2286 ATGGGGAAGAAAGAGAGTTGGTTTTCTGCAGTGAAGAAGATTCTCAGTAACCATTCTGAGAAGAAAGACAAGAAACAAGACAAATCCAAGAAGAATTTGTTCCAAAAGGAGGAGAGTGTGGATGCCTTTTCCATTTTTGAACAATCCCTGTTAGATGTTTCTGCAGAACCTCCTCCTATAGAAGATGATGTCCACCGAACTGAAGAGAATGAACCGAGCTGGCTTATGCATTCAGATACGGCAGAGCCAGAAATGTCTGAGGAAATAGCAGCTATCATGATTCAATCTGCATTTCGTGGATATACGGCCAGGAAAACATTGAGGGGTCTCAAAGCATTGATGAGATTGAGGGCGTTGGTAGAAGGGCACTCTGTGAAACAGCAGGTGGCCTCTGCTTTAAAAAGCATGCAAACTCTTGCACGTGTACAGTCAGAGATTCGTGCAAGGAGAATAAGAATGTCGGAAGAAAATCGGGCTCTCCAGCAGCAACTTTGTAATAAACGCGAGAAGGAACTCGAGAAGTCAAAAAATCATGTGGATGATGACTGGAATCATAGCACCCGATCAAAAGCACATATTGAAGCTAAACTATTGAACAAGCAAGAAGCTGCAATAAGAAGAGAAAGGGCTCTGGCTTATGCTCACTCGCATCAGCAAACATGGAGGAACTCTCCGAAAACTGCAGCCACTACTGTCATGGATCCAAACAATCCCCACTGGGGTTGGAGTTGGTTGGAGAGGTGGATGGAGGCTCGTCCATGGGAACCTCGAAGCACTGCCAATCACCCAGGCCACATGTCTAGCACAAGTGTCGCAACTCGTGCACCAATGGTCGACGTAATCCAGATATATGCTTGTCGTGACGAAAACTCTCCTGCCAAGTCTTCTCCAAGGACTTCTACCAGCCAAAAGTCAAACCAGCGGCATAGGCATCAGTCACCTTCAACTCCCAAGGCATTATCTTCACCATCTAGCAGAAAGAAAACAAACCTAGCCAACGCAGGGGTAGGCAGCTGGGGCAGGGATGATGACACAAGGAGCACTGCAAGTGTCAATCCAAAGCTCACCCGGAGGCATTCTATTGCAGAATCATCGTTGAGGGACGAATTGAGCCTTGCCAGTTTACCTTCGGTTTCAAGTCATGCATCGCCATCAAAGCCCATGACGGCTCGGTCCCGGTCGGCAGGTTCATCCGCGGCAGAGAGGAAAGGGACAATGGAAAAAGGATCTGCAAATAAAAGGCTCTCCTTTACAACTTCCCCTGCTAAACCAAGGAGGCTATCAAGTCCTCCAATTGTGAGTACCAGCCAAGTCCTTTAA 1320 47.2 MGKKESWFSAVKKILSNHSEKKDKKQDKSKKNLFQKEESVDAFSIFEQSLLDVSAEPPPIEDDVHRTEENEPSWLMHSDTAEPEMSEEIAAIMIQSAFRGYTARKTLRGLKALMRLRALVEGHSVKQQVASALKSMQTLARVQSEIRARRIRMSEENRALQQQLCNKREKELEKSKNHVDDDWNHSTRSKAHIEAKLLNKQEAAIRRERALAYAHSHQQTWRNSPKTAATTVMDPNNPHWGWSWLERWMEARPWEPRSTANHPGHMSSTSVATRAPMVDVIQIYACRDENSPAKSSPRTSTSQKSNQRHRHQSPSTPKALSSPSSRKKTNLANAGVGSWGRDDDTRSTASVNPKLTRRHSIAESSLRDELSLASLPSVSSHASPSKPMTARSRSAGSSAAERKGTMEKGSANKRLSFTTSPAKPRRLSSPPIVSTSQVL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38714711 38720076 + Sed0005571.1 Sed07g2286 721150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2286 439 PANTHER IQ-DOMAIN 5-RELATED 6 395 - -
Sed07g2286 439 MobiDBLite consensus disorder prediction 288 439 - -
Sed07g2286 439 MobiDBLite consensus disorder prediction 343 359 - -
Sed07g2286 439 MobiDBLite consensus disorder prediction 55 74 - -
Sed07g2286 439 MobiDBLite consensus disorder prediction 370 399 - -
Sed07g2286 439 Pfam IQ calmodulin-binding motif 90 108 IPR000048 GO:0005515(InterPro)
Sed07g2286 439 ProSiteProfiles IQ motif profile. 87 115 - -
Sed07g2286 439 MobiDBLite consensus disorder prediction 292 332 - -
Sed07g2286 439 MobiDBLite consensus disorder prediction 58 74 - -
Sed07g2286 439 MobiDBLite consensus disorder prediction 411 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2286 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2286 Sed-Chr7:38714711 Sed14g0426 Sed-Chr14:4402517 1.20E-65 dispersed
Sed04g2615 Sed-Chr4:38598647 Sed07g2286 Sed-Chr7:38714711 2.30E-144 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2817 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed01g2818 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed03g0040 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0042 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0041 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed03g0043 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed07g2286 . 84 258 IQD Protein Family AT2G26410 50.6 1.9e-38 158.3
Sed08g1171 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed08g1170 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed12g1498 . 1 398 IQD Protein Family AT3G22190 56.3 4.7e-88 322.8
Sed13g1870 . 1 437 IQD Protein Family AT2G26180 61.0 3.3e-118 422.9
Sed13g1871 . 11 425 IQD Protein Family AT2G26180 61.4 1.1e-110 397.9
Sed11g1830 . 1 435 IQD Protein Family AT2G26180 55.2 7.0e-100 362.1
Sed10g0264 . 1 271 IQD Protein Family AT2G33990 52.3 3.5e-65 246.1
Sed14g1502 . 1 281 IQD Protein Family AT2G33990 51.2 1.5e-63 240.7
Sed14g1502 . 1 237 IQD Protein Family AT3G15050 52.3 1.4e-58 224.2
Sed04g1560 . 43 216 IQD Protein Family AT3G15050 62.7 8.0e-54 208.4
Sed09g0603 . 1 499 IQD Protein Family AT4G00820 51.5 9.8e-115 411.8
Sed09g0603 . 1 499 IQD Protein Family AT1G01110 50.5 7.7e-112 402.1
Sed09g1621 . 1 396 IQD Protein Family AT3G16490 52.7 9.5e-75 278.5
Sed07g1415 . 1 393 IQD Protein Family AT3G16490 51.4 1.0e-68 258.5
Sed08g0818 . 1 356 IQD Protein Family AT3G16490 52.6 6.8e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012991 0 3 0 0 0 1 2 0 0 1 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 3 0 28