Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2291 ATGGCAGGTATGTTTAATGGGGAGGGATCATCATCGGTAACTTCGTCGCCTTTGCAACTCTTTCCGTGGTCGTTATCACCCGGTATAGGATCTCCATACCCTTTTCTAAGAGAGCTCAAGTCTGAAGAGAGAGGCTTGTGTCTAATTCACCTTCTTCTTGCTTGTGCCAACCAAGTTGCCATTGGTAACATTGAAAATGCTAATGTTGCCCTTGAGCAAATTTCTCACCTCGCTTCACCTGACGGGGACACAATGCAGCGGATTGCTGCCTACTTCACAGAGGCATTCGCTGATCGGATACTTAAATCCTGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAAATATTATCGGTCCCCGAAGAGATTCTTGCTCAGAGATTGTTCTTTGAACTATGTCCTTTCTTGAAGCTTGCATATGTGATAACTAATCAAGCTATCATAGAAGCTATGGAAGGAGAAAGGATGATTCATATTATTGATTTCAAATCATGTGAGCCTGCCCAATGGATAAACCTTCTTCAAACATTGAAAGATAGGCCAGATGGTCCACCCCATTTGAGAATCACCGGAATTCACGAACAAAAGGAGGTGCTGGAACAAATGGCTCTTCGACTTATTGAAGAGGCCGAAAAATGGGACATACCATTTCAGTTCACCCCTGTTGTTAGTAAGTTAGAGAACCTTGACCTTGAAAGTTTAAAGGTCAAGACAGGGGAAGCACTTGCAGTTAGCTCTGTACTTGAACTTCACTCGATTTTAGCCACGGATGAGGATAAGAAAACGTCACCTTCTGCATCGAAGAACTTGCAAAAACTCCTACGAATGAAACAACGAACACTCGGAGAATGGCTCGAGACAGATTCGTTGCAAGTTTTAAGCAGCCCAGATTCAGCCTCAGTATCTTCCCCATCAGGATTGACTCCATCCCAAAAGATGAACGGTTTTTTGAGTGCACTCTGGGGCCTCTCTCCAAAAGTGATGGTAGTAACAGAGCAAGAATCAAACCTGAATGGATCAACTTTCATGGAGAGAGTACTAGAAGCACTAAACTTCTATGCCGCATTGTTTGATTGTTTGGAGTCAACCATGTCAAGATCATCTATCGAGCGTCAAAGGGTCGAGAAGATGCTTTTAGGAGAGGAAATCAAAAACATCATTGCTTGTGAGGGAACGGAGAGAACAGAGAGGCACGAAAAGCTCGAGAAATGGATACTAAGGCTCGAATCCGTGGGGTTCGGGAGGGTTCCATTGAGCTATCATAGCATGTTACTGGGAAGTAAACTATTGCAAAGCTTTGGATATGATGGATATAAAATAAAAGAAGAGAATGGATTTGTGTTCATATGTTGGCAAGATAGGCCACTTTTTTCAGTGTCAGCTTGGGGGTTTCAAAGACAAAGCTGA 1407 43.35 MAGMFNGEGSSSVTSSPLQLFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVALEQISHLASPDGDTMQRIAAYFTEAFADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLIEEAEKWDIPFQFTPVVSKLENLDLESLKVKTGEALAVSSVLELHSILATDEDKKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVLSSPDSASVSSPSGLTPSQKMNGFLSALWGLSPKVMVVTEQESNLNGSTFMERVLEALNFYAALFDCLESTMSRSSIERQRVEKMLLGEEIKNIIACEGTERTERHEKLEKWILRLESVGFGRVPLSYHSMLLGSKLLQSFGYDGYKIKEENGFVFICWQDRPLFSVSAWGFQRQS 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38752469 38754981 + Sed0014173.1 Sed07g2291 721155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2291 468 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 462 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed07g2291 468 Pfam GRAS domain family 48 462 IPR005202 -
Sed07g2291 468 ProSiteProfiles GRAS family profile. 39 463 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2622 Sed-Chr4:38644212 Sed07g2291 Sed-Chr7:38752469 1.30E-248 dispersed
Sed07g2291 Sed-Chr7:38752469 Sed11g2281 Sed-Chr11:35982823 6.50E-62 dispersed
Sed04g2621 Sed-Chr4:38644212 Sed07g2291 Sed-Chr7:38752469 1.30E-248 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39167 PF03514 GRAS 8.40E-135 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2291 - - - 0.0