Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2300 ATGTTGGAGCGAAGCTTCGATTCTCATCCTCGAGAAAATATATATATAATAAAAGAAGGTTTTGCCGAGTTTCTCAGCATTTGGCAACAATTGGATTATATAAACGAAGGAACTCTGTTGATTAAAATGTCATATGCAAATCCTTATTTTGACGTTGTTCGGACAAAACCTGAGGTTATCGGTCCTCCCCAAGATGATGATATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAATGTAGCTGTCTCTAGTAATGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAACGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTACACAACCGGTGTCCCACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCATACTATAGCAAGCTGAAACACGAATCTCAATGTGCCTATCGTCCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTTATTGGCGATATTCCATTTTTGGTCGACCACCTCAAGGATGATCACAAAGTTGACATGCACAATGGGAGCACTTTCAATCATCGGTATGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCTACCTGGATGTTAACGGTTTTCAGCTGTTTTGGCCAGTATTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCAGTCTACATAGCATTTTTGCGGTTTATGGGAGACGATAACGAGGCCAAGAACTACAACTATAGCCTTGAGGTTAGTGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGCTTTGACGGTCTTATTATACAACGGAATATGGCGCTCTTCTTCTCGGGGGTAGATCGGAAGGAATTGAAACTTAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 1044 43.87 MLERSFDSHPRENIYIIKEGFAEFLSIWQQLDYINEGTLLIKMSYANPYFDVVRTKPEVIGPPQDDDMMDVSESVSDPARNGGKPNVAVSSNVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCAYRPYNCPYAGSECTVIGDIPFLVDHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYNYSLEVSGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGVDRKELKLRVTGRIWKEQ 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38802598 38809072 + Sed0009309.1 Sed07g2300 721164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2300 347 SUPERFAMILY RING/U-box 92 139 - -
Sed07g2300 347 FunFam E3 ubiquitin-protein ligase SINAT5-like 208 340 - -
Sed07g2300 347 Pfam Sina, zinc finger 148 223 - -
Sed07g2300 347 MobiDBLite consensus disorder prediction 61 84 - -
Sed07g2300 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 207 IPR013083 -
Sed07g2300 347 CDD Sina 213 341 - -
Sed07g2300 347 ProSiteProfiles Zinc finger SIAH-type profile. 152 212 IPR013010 GO:0008270(InterPro)
Sed07g2300 347 Pfam Sina, TRAF-like domain 243 340 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed07g2300 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Sed07g2300 347 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 78 342 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed07g2300 347 SUPERFAMILY TRAF domain-like 152 344 - -
Sed07g2300 347 ProSiteProfiles Zinc finger RING-type profile. 99 135 IPR001841 -
Sed07g2300 347 FunFam E3 ubiquitin-protein ligase SINAT3 151 207 - -
Sed07g2300 347 FunFam E3 ubiquitin-protein ligase SINAT5-like 57 150 - -
Sed07g2300 347 CDD RING-HC_SIAHs 97 135 - -
Sed07g2300 347 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 99 134 IPR049548 -
Sed07g2300 347 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 208 340 IPR008974 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2300 Sed-Chr7:38802598 Sed07g2302 Sed-Chr7:38803880 3.90E-189 dispersed
Sed07g2300 Sed-Chr7:38802598 Sed07g2301 Sed-Chr7:38802598 9.00E-186 tandem
Sed04g2640 Sed-Chr4:38911917 Sed07g2300 Sed-Chr7:38802598 1.30E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2300 K04506 - csv:101205198 609.372