Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2301 ATGTCATATGCAAATCCTTATTTTGACGTTGTTCGGACAAAACCTGAGGTTATCGGTCCTCCCCAAGATGATGATATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAATGTAGCTGTCTCTAGTAATGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAACGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTACACAACCGGTGTCCCACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCATACTATAGCAAGCTGAAACACGAATCTCAATGTGCCTATCGTCCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTTATTGGCGATATTCCATTTTTGGTCGACCACCTCAAGGATGATCACAAAGTTGACATGCACAATGGGAGCACTTTCAATCATCGGTATGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCTACCTGGATGTTAACGGTTTTCAGCTGTTTTGGCCAGTATTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCAGTCTACATAGCATTTTTGCGGTTTATGGGAGACGATAACGAGGCCAAGAACTACAACTATAGCCTTGAGGTTAGTGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGCTTTGACGGTCTTATTATACAACGGAATATGGCGCTCTTCTTCTCGGGGGTAGATCGGAAGGAATTGAAACTTAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 918 45.21 MSYANPYFDVVRTKPEVIGPPQDDDMMDVSESVSDPARNGGKPNVAVSSNVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCAYRPYNCPYAGSECTVIGDIPFLVDHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYNYSLEVSGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGVDRKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38802598 38809072 + Sed0009309.2 Sed07g2301 721165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2301 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 300 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed07g2301 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
Sed07g2301 305 SUPERFAMILY TRAF domain-like 110 302 - -
Sed07g2301 305 MobiDBLite consensus disorder prediction 15 44 - -
Sed07g2301 305 Pfam Sina, zinc finger 106 181 - -
Sed07g2301 305 CDD RING-HC_SIAHs 55 93 - -
Sed07g2301 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 166 298 - -
Sed07g2301 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Sed07g2301 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515(InterPro)
Sed07g2301 305 Pfam Sina, TRAF-like domain 201 298 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed07g2301 305 SUPERFAMILY RING/U-box 50 97 - -
Sed07g2301 305 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Sed07g2301 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
Sed07g2301 305 CDD Sina 171 299 - -
Sed07g2301 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Sed07g2301 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 109 IPR013083 -
Sed07g2301 305 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2640 Sed-Chr4:38911917 Sed07g2301 Sed-Chr7:38802598 1.30E-175 dispersed
Sed07g2301 Sed-Chr7:38802598 Sed11g1561 Sed-Chr11:31198724 4.50E-165 dispersed
Sed07g2300 Sed-Chr7:38802598 Sed07g2301 Sed-Chr7:38802598 9.00E-186 tandem
Sed07g2301 Sed-Chr7:38802598 Sed07g2302 Sed-Chr7:38803880 1.40E-185 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2301 K04506 - csv:101205198 609.372