Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2302 ATGCATATAGGAACTCTGTTGATTAAAATGTCATATGCAAATCCTTATTTTGACGTTGTTCGGACAAAACCTGAGGTTATCGGTCCTCCCCAAGATGATGATATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAATGTAGCTGTCTCTAGTAATGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAACGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTACACAACCGGTGTCCCACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCATACTATAGCAAGCTGAAACACGAATCTCAATGTGCCTATCGTCCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTTATTGGCGATATTCCATTTTTGGTCGACCACCTCAAGGATGATCACAAAGTTGACATGCACAATGGGAGCACTTTCAATCATCGGTATGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCTACCTGGATGTTAACGGTTTTCAGCTGTTTTGGCCAGTATTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCAGTCTACATAGCATTTTTGCGGTTTATGGGAGACGATAACGAGGCCAAGAACTACAACTATAGCCTTGAGGTTAGTGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGCTTTGACGGTCTTATTATACAACGGAATATGGCGCTCTTCTTCTCGGGGGTAGATCGGAAGGAATTGAAACTTAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 945 44.76 MHIGTLLIKMSYANPYFDVVRTKPEVIGPPQDDDMMDVSESVSDPARNGGKPNVAVSSNVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCAYRPYNCPYAGSECTVIGDIPFLVDHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYNYSLEVSGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGVDRKELKLRVTGRIWKEQ 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38803880 38809072 + Sed0009309.3 Sed07g2302 721166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2302 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 174 IPR013083 -
Sed07g2302 314 CDD RING-HC_SIAHs 64 102 - -
Sed07g2302 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 118 IPR013083 -
Sed07g2302 314 CDD Sina 180 308 - -
Sed07g2302 314 SUPERFAMILY TRAF domain-like 119 311 - -
Sed07g2302 314 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 47 309 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed07g2302 314 SUPERFAMILY RING/U-box 59 106 - -
Sed07g2302 314 FunFam E3 ubiquitin-protein ligase SINAT5-like 175 307 - -
Sed07g2302 314 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270(InterPro)
Sed07g2302 314 Pfam Sina, TRAF-like domain 210 307 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed07g2302 314 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 66 101 IPR049548 -
Sed07g2302 314 FunFam E3 ubiquitin-protein ligase SINAT3 118 174 - -
Sed07g2302 314 MobiDBLite consensus disorder prediction 27 52 - -
Sed07g2302 314 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 175 307 IPR008974 GO:0005515(InterPro)
Sed07g2302 314 FunFam E3 ubiquitin-protein ligase SINAT5-like 24 117 - -
Sed07g2302 314 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Sed07g2302 314 Pfam Sina, zinc finger 115 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2300 Sed-Chr7:38802598 Sed07g2302 Sed-Chr7:38803880 3.90E-189 dispersed
Sed07g2302 Sed-Chr7:38803880 Sed11g1561 Sed-Chr11:31198724 2.10E-165 dispersed
Sed07g2301 Sed-Chr7:38802598 Sed07g2302 Sed-Chr7:38803880 1.40E-185 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2302 K04506 - csv:101205198 609.372